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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4mhtSAHModification methylase HhaI2.1.1.37

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4mhtSAHModification methylase HhaI2.1.1.371.000
5mhtSAHModification methylase HhaI2.1.1.370.709
2z6uSAHModification methylase HhaI2.1.1.370.661
7mhtSAHModification methylase HhaI2.1.1.370.650
9mhtSAHModification methylase HhaI2.1.1.370.610
8mhtSAHModification methylase HhaI2.1.1.370.600
1mhtSAHModification methylase HhaI2.1.1.370.590
1skmSAHModification methylase HhaI2.1.1.370.590
2c7qSAHModification methylase HhaI2.1.1.370.581
2uyhSAHModification methylase HhaI2.1.1.370.573
1fjxSAHModification methylase HhaI2.1.1.370.568
2i9kSAHModification methylase HhaI2.1.1.370.566
10mhSAHModification methylase HhaI2.1.1.370.561
3mhtSAHModification methylase HhaI2.1.1.370.554
2zcjSAHModification methylase HhaI2.1.1.370.552
2hmySAMModification methylase HhaI2.1.1.370.471