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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4mfb29TGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4mfb29TGag-Pol polyprotein2.7.7.491.000
4h4m494Gag-Pol polyprotein2.7.7.490.634
4h4o506Gag-Pol polyprotein2.7.7.490.617
3c6tM14Gag-Pol polyprotein2.7.7.490.583
3c6uM22Gag-Pol polyprotein2.7.7.490.581
4rw6494Gag-Pol polyprotein2.7.7.490.577
3dyaPZLGag-Pol polyprotein2.7.7.490.568
3dokGWJPol protein/0.557
3ffi3OBGag-Pol polyprotein2.7.7.490.555
3t1a5MAGag-Pol polyprotein2.7.7.490.549
4lsl1YQGag-Pol polyprotein2.7.7.490.549
3t195MAGag-Pol polyprotein2.7.7.490.548
3drpR8EGag-Pol polyprotein2.7.7.490.546
3dolGWIPol protein/0.538
3lalKRVGag-Pol polyprotein2.7.7.490.537
3e01PZ2Gag-Pol polyprotein2.7.7.490.534
2be2R22Gag-Pol polyprotein2.7.7.490.532
2wonZZEGag-Pol polyprotein2.7.7.490.532
3lakKR1Gag-Pol polyprotein2.7.7.490.524
2b5j3ACGag-Pol polyprotein2.7.7.490.521
2ynhEURGag-Pol polyprotein2.7.7.490.520
3dlgGWEGag-Pol polyprotein2.7.7.490.520
4rw4494Gag-Pol polyprotein2.7.7.490.517
3is9AC7Gag-Pol polyprotein2.7.7.490.515
3dmjGWEPol protein/0.508
3tamM06Gag-Pol polyprotein2.7.7.490.508
2ynfWHUGag-Pol polyprotein2.7.7.490.499
1c1bGCAGag-Pol polyprotein2.7.7.490.497
2jleI15Reverse transcriptase/RNaseH/0.496
3drrR8EGag-Pol polyprotein2.7.7.490.494
1rtiHEFGag-Pol polyprotein2.7.7.490.483
3irxUDRGag-Pol polyprotein2.7.7.490.478
3qlhT27Gag-Pol polyprotein2.7.7.490.453
4i2pG73Gag-Pol polyprotein2.7.7.490.452
2ze2T27Gag-Pol polyprotein2.7.7.490.447
1rt1MKCGag-Pol polyprotein2.7.7.490.446
4i2q1BTGag-Pol polyprotein2.7.7.490.443