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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4m42ATPDNA-directed DNA polymerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4m42ATPDNA-directed DNA polymerase/1.000
4m3tATPDNA-directed DNA polymerase/0.646
4fk4DGTDNA-directed DNA polymerase/0.630
4dtjTTPDNA-directed DNA polymerase/0.628
4m3xATPDNA-directed DNA polymerase/0.627
4fjmDCPDNA-directed DNA polymerase/0.626
4dtpDGTDNA-directed DNA polymerase/0.619
4dtxTTPDNA-directed DNA polymerase/0.616
3supDCPDNA-directed DNA polymerase/0.615
4fjlDGTDNA-directed DNA polymerase/0.606
4fjjTTPDNA-directed DNA polymerase/0.593
3lzjCTPDNA-directed DNA polymerase/0.591
4dtmDCPDNA-directed DNA polymerase/0.580
4khyTTPDNA-directed DNA polymerase/0.578
3ne6DCPDNA-directed DNA polymerase/0.564
4fj5DTPDNA-directed DNA polymerase/0.561
4ptfDCPDNA polymerase epsilon catalytic subunit A2.7.7.70.527
4dtoDCPDNA-directed DNA polymerase/0.520