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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4lsl1YQGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4lsl1YQGag-Pol polyprotein2.7.7.491.000
4h4m494Gag-Pol polyprotein2.7.7.490.612
4h4o506Gag-Pol polyprotein2.7.7.490.580
4mfb29TGag-Pol polyprotein2.7.7.490.549
3dokGWJPol protein/0.543
3t1a5MAGag-Pol polyprotein2.7.7.490.543
3ffi3OBGag-Pol polyprotein2.7.7.490.541
4rw6494Gag-Pol polyprotein2.7.7.490.541
3dyaPZLGag-Pol polyprotein2.7.7.490.539
3c6tM14Gag-Pol polyprotein2.7.7.490.534
3c6uM22Gag-Pol polyprotein2.7.7.490.525
3lalKRVGag-Pol polyprotein2.7.7.490.523
2ynhEURGag-Pol polyprotein2.7.7.490.516
2be2R22Gag-Pol polyprotein2.7.7.490.512
2wonZZEGag-Pol polyprotein2.7.7.490.509
2b5j3ACGag-Pol polyprotein2.7.7.490.504
4rw4494Gag-Pol polyprotein2.7.7.490.498
3is9AC7Gag-Pol polyprotein2.7.7.490.480
3lakKR1Gag-Pol polyprotein2.7.7.490.475
3dmjGWEPol protein/0.474
3t195MAGag-Pol polyprotein2.7.7.490.467
1c1bGCAGag-Pol polyprotein2.7.7.490.466
3lamKRPGag-Pol polyprotein2.7.7.490.456
3irxUDRGag-Pol polyprotein2.7.7.490.454
1c1c612Gag-Pol polyprotein2.7.7.490.449
2vbdV10Isopenicillin N synthase1.21.3.10.442
4i2q1BTGag-Pol polyprotein2.7.7.490.441
3lanKBTGag-Pol polyprotein2.7.7.490.440