Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4ldeP0GBeta-2 adrenergic receptor

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4ldeP0GBeta-2 adrenergic receptor/1.000
4ldlXQCBeta-2 adrenergic receptor/0.731
4amjCVDBeta-1 adrenergic receptor/0.541
3p0gP0GBeta-2 adrenergic receptor/0.532
3ny9JSZBeta-2 adrenergic receptor/0.528
5d6lCAUBeta-2 adrenergic receptor/0.524
3sn6P0GBeta-2 adrenergic receptor/0.524
2ycxP32Beta-1 adrenergic receptor/0.523
5d5bCAUBeta-2 adrenergic receptor/0.522
3d4sTIMBeta-2 adrenergic receptor/0.521
5jqhCAUBeta-2 adrenergic receptor/0.518
2rh1CAUBeta-2 adrenergic receptor/0.515
5d5aCAUBeta-2 adrenergic receptor/0.512
3ny8JRZBeta-2 adrenergic receptor/0.509
4amiG90Beta-1 adrenergic receptor/0.508
3nyaJTZBeta-2 adrenergic receptor/0.500
2ycyP32Beta-1 adrenergic receptor/0.484
2ycwCAUBeta-1 adrenergic receptor/0.483
2y01Y00Beta-1 adrenergic receptor/0.476
2yczI32Beta-1 adrenergic receptor/0.468
2y02WHJBeta-1 adrenergic receptor/0.467
2y0468HBeta-1 adrenergic receptor/0.463
5a8eXTKBeta-1 adrenergic receptor/0.457
4bvnP32Beta-1 adrenergic receptor/0.447
4iarERM5-hydroxytryptamine receptor 1B/0.441
4gbrCAUBeta-2 adrenergic receptor/0.440