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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4kxjP34Nucleoprotein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4kxjP34Nucleoprotein/1.000
2w6cBM4Acetylcholinesterase3.1.1.70.464
4bb3KKAIsopenicillin N synthase1.21.3.10.457
1ut6A8NAcetylcholinesterase3.1.1.70.456
2j3qTFLAcetylcholinesterase3.1.1.70.456
3gsiTHGDimethylglycine oxidase1.5.3.100.454
3tfuPL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase2.6.1.620.454
4lmcC5PNucleoprotein/0.453
1u65CP0Acetylcholinesterase3.1.1.70.452
1odcA8BAcetylcholinesterase3.1.1.70.448
1eveE20Acetylcholinesterase3.1.1.70.447
1pj6FOLDimethylglycine oxidase1.5.3.100.447
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.444
1h22E10Acetylcholinesterase3.1.1.70.443
2gywOBIAcetylcholinesterase3.1.1.70.443
1pj7FFODimethylglycine oxidase1.5.3.100.441
2xveFADPutative flavin-containing monooxygenase/0.440
4s0vSUVOrexin receptor type 2/0.440