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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4k5p1OSM1 family aminopeptidase3.4.11

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4k5p1OSM1 family aminopeptidase3.4.111.000
3t8vBTJM1 family aminopeptidase3.4.110.806
4k5o1OTM1 family aminopeptidase3.4.110.720
3q44D50M1 family aminopeptidase3.4.110.676
3q43D66M1 family aminopeptidase3.4.110.564
4xmxBESAminopeptidase N3.4.11.20.508
4jbsP52Endoplasmic reticulum aminopeptidase 23.4.110.490
2dqmBESAminopeptidase N3.4.11.20.473
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.456
2yd0BESEndoplasmic reticulum aminopeptidase 13.4.110.456
3o6o94MHeat shock protein 83/0.445
1ma0NADAlcohol dehydrogenase class-31.1.1.10.443
2iko7IGRenin3.4.23.150.443
2ikuLIYRenin3.4.23.150.440