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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4k38SAMAnaerobic sulfatase-maturating enzyme1.8.98

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4k38SAMAnaerobic sulfatase-maturating enzyme1.8.981.000
4k39SAMAnaerobic sulfatase-maturating enzyme1.8.980.645
4k37SAMAnaerobic sulfatase-maturating enzyme1.8.980.610
4k36SAMAnaerobic sulfatase-maturating enzyme1.8.980.606
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.468
2g1n1IGRenin3.4.23.150.467
4bfxZVXPantothenate kinase2.7.1.330.467
4bfvZVVPantothenate kinase2.7.1.330.453
5dp2NAPCurF/0.452
4bftZVTPantothenate kinase2.7.1.330.449
3zkyWT4Isopenicillin N synthase1.21.3.10.442