sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4jvb | 1M0 | Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4jvb | 1M0 | Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta | / | 1.000 | |
| 4jvf | 17X | Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta | / | 0.620 | |
| 4jv6 | 18F | Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta | / | 0.479 | |
| 2y03 | Y01 | Beta-1 adrenergic receptor | / | 0.465 | |
| 2y01 | Y01 | Beta-1 adrenergic receptor | / | 0.464 | |
| 4jv8 | 1M1 | Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta | / | 0.457 | |
| 2y02 | Y01 | Beta-1 adrenergic receptor | / | 0.454 | |
| 2y00 | Y01 | Beta-1 adrenergic receptor | / | 0.452 | |
| 3p6p | A6B | Camphor 5-monooxygenase | 1.14.15.1 | 0.452 | |
| 3dl9 | V2H | Vitamin D 25-hydroxylase | / | 0.450 | |
| 3t2k | FAD | Sulfide-quinone reductase | / | 0.445 | |
| 2qo5 | CHD | Fatty acid-binding protein 10-A, liver basic | / | 0.443 |