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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4jtpASCRibosome inactivating protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4jtpASCRibosome inactivating protein/1.000
4lwxMU2Ribosome inactivating protein/0.667
3qjiMGPRibosome inactivating protein/0.601
5ilwURIRibosome inactivating protein/0.593
4emrMGPRibosome inactivating protein/0.558
3u8fFGMRibosome inactivating protein/0.548
1mrkFMCRibosome-inactivating protein alpha-trichosanthin3.2.2.220.494
2g1a5HGClass B acid phosphatase3.1.3.20.465
3l3lL3LPoly [ADP-ribose] polymerase 12.4.2.300.460
3aiqHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1b, chloroplastic3.2.1.1820.447
4zz6CTPRibosome inactivating protein/0.443
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.442