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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4jtaNAPVoltage-gated potassium channel subunit beta-2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4jtaNAPVoltage-gated potassium channel subunit beta-2/1.000
4jtcNAPVoltage-gated potassium channel subunit beta-2/0.615
4jtdNAPVoltage-gated potassium channel subunit beta-2/0.587
3lnmNAPVoltage-gated potassium channel subunit beta-2/0.582
2r9rNAPVoltage-gated potassium channel subunit beta-2/0.577
4aubNAPL-glyceraldehyde 3-phosphate reductase1.1.10.553
2c91NAPAflatoxin B1 aldehyde reductase member 2/0.525
1lqaNDPProtein tas/0.501
1az2NAPAldose reductase1.1.1.210.490
2clpNDPAflatoxin B1 aldehyde reductase member 3/0.471
4g5dNDPProstaglandin F synthase1.1.1.1880.468
1x98NAPAldose reductase1.1.1.210.467
3v36NAPAldose reductase1.1.1.210.467
2iq0NAPAldose reductase1.1.1.210.464
1ah4NAPAldose reductase1.1.1.210.463
1og6NAPOxidoreductase YdhF10.461
2j8tNAPAldose reductase1.1.1.210.459
3h7uNAPNADPH-dependent aldo-keto reductase, chloroplastic/0.458
1x96NAPAldose reductase1.1.1.210.453
2acqNAPAldose reductase1.1.1.210.453
3h7rNAPAldo-keto reductase family 4 member C8/0.451
2pevNDPAldose reductase1.1.1.210.450
2pf8NDPAldose reductase1.1.1.210.450
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.450
2acuNAPAldose reductase1.1.1.210.448
3q65NAPAldose reductase1.1.1.210.447
3q67NAPAldose reductase1.1.1.210.446
1adsNAPAldose reductase1.1.1.210.444
1z8aNAPAldose reductase1.1.1.210.440