sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4jqa | ID8 | Aldo-keto reductase family 1 member C2 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4jqa | ID8 | Aldo-keto reductase family 1 member C2 | / | 1.000 | |
| 4jtq | FLP | Aldo-keto reductase family 1 member C2 | / | 0.716 | |
| 4jtr | IZP | Aldo-keto reductase family 1 member C2 | / | 0.622 | |
| 1ihi | IU5 | Aldo-keto reductase family 1 member C2 | / | 0.594 | |
| 4jtr | IBP | Aldo-keto reductase family 1 member C2 | / | 0.580 | |
| 4jq3 | ZOM | Aldo-keto reductase family 1 member C2 | / | 0.569 | |
| 4jq1 | NPS | Aldo-keto reductase family 1 member C2 | / | 0.543 | |
| 2ipj | FFA | Aldo-keto reductase family 1 member C2 | / | 0.526 | |
| 1mrq | STR | Aldo-keto reductase family 1 member C1 | / | 0.524 | |
| 4jq2 | SUZ | Aldo-keto reductase family 1 member C2 | / | 0.523 | |
| 4b12 | C23 | Glycylpeptide N-tetradecanoyltransferase | / | 0.515 | |
| 4l1x | STR | Aldo-keto reductase family 1 member C2 | / | 0.514 | |
| 4xo7 | ASD | Aldo-keto reductase family 1 member C2 | / | 0.514 | |
| 2f38 | 15M | Aldo-keto reductase family 1 member C3 | / | 0.513 | |
| 2w6c | BM4 | Acetylcholinesterase | 3.1.1.7 | 0.482 | |
| 1pqc | 444 | Oxysterols receptor LXR-beta | / | 0.481 | |
| 3k3h | BYE | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.476 | |
| 2zu9 | GDP | Mannosyl-3-phosphoglycerate synthase | 2.4.1.217 | 0.473 | |
| 4jq4 | IMN | Aldo-keto reductase family 1 member C2 | / | 0.473 | |
| 3h3r | 14H | Collagen type IV alpha-3-binding protein | / | 0.470 | |
| 4bbh | YBN | Glycylpeptide N-tetradecanoyltransferase | / | 0.470 | |
| 4b14 | 4XB | Glycylpeptide N-tetradecanoyltransferase | / | 0.469 | |
| 4b11 | 7I1 | Glycylpeptide N-tetradecanoyltransferase | / | 0.468 | |
| 1u65 | CP0 | Acetylcholinesterase | 3.1.1.7 | 0.467 | |
| 3cav | CI2 | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.463 | |
| 3n0h | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.463 | |
| 3uzz | TES | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.460 | |
| 1q84 | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.457 | |
| 1efy | BZC | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.456 | |
| 1pq9 | 44B | Oxysterols receptor LXR-beta | / | 0.456 | |
| 2fap | RAD | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.456 | |
| 2fap | RAD | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.456 | |
| 3tfu | PL8 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | 2.6.1.62 | 0.455 | |
| 1zgb | A1E | Acetylcholinesterase | 3.1.1.7 | 0.454 | |
| 4itx | IN5 | Cystathionine beta-lyase MetC | 4.4.1.8 | 0.453 | |
| 3bl7 | DD1 | m7GpppX diphosphatase | 3.6.1.59 | 0.452 | |
| 3is9 | AC7 | Gag-Pol polyprotein | 2.7.7.49 | 0.452 | |
| 1zq5 | E04 | Aldo-keto reductase family 1 member C3 | / | 0.450 | |
| 4dbs | 0HV | Aldo-keto reductase family 1 member C3 | / | 0.450 | |
| 4mr7 | 2BV | Gamma-aminobutyric acid type B receptor subunit 1 | / | 0.450 | |
| 1nsg | RAD | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.449 | |
| 1nsg | RAD | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.449 | |
| 2zev | B71 | Geranylgeranyl pyrophosphate synthase | / | 0.449 | |
| 3u9f | CLM | Chloramphenicol acetyltransferase | 2.3.1.28 | 0.449 | |
| 1fml | RTL | Retinol dehydratase | / | 0.448 | |
| 3dys | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.448 | |
| 4e90 | 7RG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.448 | |
| 4zzi | 1NS | NAD-dependent protein deacetylase sirtuin-1 | 3.5.1 | 0.448 | |
| 3gjw | GJW | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.447 | |
| 3k3e | PDB | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.447 | |
| 3u57 | DH8 | Raucaffricine-O-beta-D-glucosidase | 3.2.1.125 | 0.447 | |
| 3zky | WT4 | Isopenicillin N synthase | 1.21.3.1 | 0.447 | |
| 4dk7 | 0KS | Oxysterols receptor LXR-beta | / | 0.447 | |
| 2a3b | CFF | Endochitinase B1 | 3.2.1.14 | 0.446 | |
| 2yne | YNE | Glycylpeptide N-tetradecanoyltransferase | / | 0.446 | |
| 1ypg | UIR | Prothrombin | 3.4.21.5 | 0.445 | |
| 1w4l | GL8 | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 1p8d | CO1 | Oxysterols receptor LXR-beta | / | 0.443 | |
| 2cek | N8T | Acetylcholinesterase | 3.1.1.7 | 0.443 | |
| 3f3y | 4OA | Bile salt sulfotransferase | 2.8.2.14 | 0.443 | |
| 4b13 | X25 | Glycylpeptide N-tetradecanoyltransferase | / | 0.443 | |
| 4fam | 0SZ | Aldo-keto reductase family 1 member C3 | / | 0.443 | |
| 2wu4 | HBP | Acetylcholinesterase | 3.1.1.7 | 0.442 | |
| 4hcy | 0YN | Transketolase | / | 0.442 | |
| 1ry8 | RUT | Aldo-keto reductase family 1 member C3 | / | 0.441 | |
| 3aiv | HBO | 4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic | 3.2.1.182 | 0.441 | |
| 3ptz | UDX | UDP-glucose 6-dehydrogenase | 1.1.1.22 | 0.441 | |
| 4kby | C2E | Stimulator of interferon genes protein | / | 0.441 | |
| 1uho | VDN | cGMP-specific 3',5'-cyclic phosphodiesterase | / | 0.440 | |
| 2xuj | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.440 | |
| 3ntz | 3TZ | Dihydrofolate reductase | 1.5.1.3 | 0.440 |