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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.121.000
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.718
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.683
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.670
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.660
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.654
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.650
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.120.614
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.608
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.592
4lva20MNicotinamide phosphoribosyltransferase2.4.2.120.579
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.553
4lvg20ONicotinamide phosphoribosyltransferase2.4.2.120.534
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.120.521
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.520
4o1bDGBNicotinamide phosphoribosyltransferase2.4.2.120.483
3g8eIS1Nicotinamide phosphoribosyltransferase2.4.2.120.459