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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4jloADPAdenylate kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4jloADPAdenylate kinase/1.000
4jl5ADPAdenylate kinase/0.612
4jl6ADPAdenylate kinase/0.587
4ikeADPAdenylate kinase/0.577
4jkyADPAdenylate kinase/0.567
4jldADPAdenylate kinase/0.566
4mkhAP5Adenylate kinase/0.510
3dl0AP5Adenylate kinase/0.497
4cf7ADPAdenylate kinase/0.477
3tlxADPAdenylate kinase 2/0.475
1zioAP5Adenylate kinase/0.474
4qbfAP5Adenylate kinase/0.473
4typAP5Adenylate kinase/0.468
4mkfAP5Adenylate kinase/0.464
1e4yAP5Adenylate kinase/0.447
2ql6ADPNicotinamide riboside kinase 1/0.446
3hprAP5Adenylate kinase/0.440