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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4iqqD16Thymidylate synthase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4iqqD16Thymidylate synthase/1.000
1ci7CB3Thymidylate synthase2.1.1.450.526
4eb4D16Thymidylate synthase2.1.1.450.503
1hvyD16Thymidylate synthase2.1.1.450.489
1i00D16Thymidylate synthase2.1.1.450.475
4b1fKRHGlutamate racemase/0.466
3bgxMEFThymidylate synthase/0.461
4r20AERCytochrome P450 family 17 polypeptide 2/0.459
1an5CB3Thymidylate synthase/0.458
4b4w9L9Bifunctional protein FolD/0.458
1pkfEPDEpothilone C/D epoxidase1.140.456
3e5aVX6Aurora kinase A2.7.11.10.455
3l0lHC3Nuclear receptor ROR-gamma/0.455
4bj9UHBTankyrase-22.4.2.300.455
4ez8DHFThymidylate synthase2.1.1.450.455
1fwmCB3Thymidylate synthase/0.450
4fogC2FThymidylate synthase ThyA/0.450
4ktl1CQCytochrome P450/0.450
3p6oETGCamphor 5-monooxygenase1.14.15.10.449
4iae1DXAlr2278 protein/0.449
1tduCB3Thymidylate synthase/0.448
2fr0NDP6-deoxyerythronolide-B synthase EryA1, modules 1 and 2/0.448
3kytHC2Nuclear receptor ROR-gamma/0.447
3bxxQUEDihydroflavonol 4-reductase1.1.1.2190.446
3vtbTKAVitamin D3 receptor/0.446
1n83CLRNuclear receptor ROR-alpha/0.445
3gqvNAPEnoyl reductase LovC10.445
3tdaPN0Cytochrome P450 2D6/0.445
4b7sQLECytochrome P450 monooxygenase PikC/0.445
1f4gTP4Thymidylate synthase/0.444
1x8vESLLanosterol 14-alpha demethylase1.14.13.700.444
1f4fTP3Thymidylate synthase/0.443
2azyCHDPhospholipase A2, major isoenzyme3.1.1.40.443
4nieNBHNuclear receptor ROR-gamma/0.443
1dduCB3Thymidylate synthase/0.442
1ju6LYAThymidylate synthase2.1.1.450.442
1kzjCB3Thymidylate synthase/0.442
3a1l2CCCytochrome P450/0.442
4isk1JYThymidylate synthase/0.442
4kuhCAA3-hydroxybutyryl-CoA dehydrogenase/0.442
1axwMTXThymidylate synthase/0.441
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.441
4b7dQLECytochrome P450 monooxygenase PikC/0.441
4gevCB3Thymidylate synthase/0.440