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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4ih61EPGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4ih61EPGenome polyprotein2.7.7.481.000
3u4o08EGenome polyprotein2.7.7.480.641
2gc8885Polyprotein/0.630
3tyvHI3Genome polyprotein2.7.7.480.624
3ska053Genome polyprotein2.7.7.480.604
4mk728OGenome polyprotein2.7.7.480.604
3uph0C1Genome polyprotein2.7.7.480.603
3csoXNIGenome polyprotein2.7.7.480.598
3ske054Genome polyprotein2.7.7.480.597
3upi0C2Genome polyprotein2.7.7.480.596
3h5uH5UGenome polyprotein2.7.7.480.591
3h59H59Genome polyprotein2.7.7.480.585
3gnwXNCGenome polyprotein2.7.7.480.580
4ih71ERGenome polyprotein2.7.7.480.578
3gnvXNZGenome polyprotein2.7.7.480.577
4iz02BIGenome polyprotein2.7.7.480.577
3d5m4MSGenome polyprotein2.7.7.480.576
3igvB80Genome polyprotein2.7.7.480.573
3h5sH5SGenome polyprotein2.7.7.480.572
2yoj8Y6Genome polyprotein2.7.7.480.569
3bsa1PDGenome polyprotein2.7.7.480.566
2giqNN2Genome polyprotein2.7.7.480.560
2fvc888Polyprotein/0.559
3golXNDGenome polyprotein2.7.7.480.556
3cdeN3HGenome polyprotein2.7.7.480.554
1z4uPH9Polyprotein/0.546
1yvfPH7Polyprotein/0.537
3e51N35Genome polyprotein2.7.7.480.537
3co93MSGenome polyprotein2.7.7.480.519
4mk828QGenome polyprotein2.7.7.480.517
3cvkN34Genome polyprotein2.7.7.480.515
3cwj321Genome polyprotein2.7.7.480.515
3h98B5PGenome polyprotein2.7.7.480.479
3fqk79ZGenome polyprotein2.7.7.480.450