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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4ia2BIVVitamin D3 receptor A

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4ia2BIVVitamin D3 receptor A/1.000
4rupH97Vitamin D3 receptor A/0.727
4ia1BIVVitamin D3 receptor A/0.706
2hcdBIVVitamin D3 receptor A/0.658
4ia7BIVVitamin D3 receptor A/0.635
4ia3BIVVitamin D3 receptor A/0.630
2hc4VDXVitamin D3 receptor A/0.628
4g1y0VOVitamin D3 receptor A/0.626
4ruoBIVVitamin D3 receptor A/0.602
4g1z0VPVitamin D3 receptor A/0.599
2hbhXE4Vitamin D3 receptor A/0.574
4g210VPVitamin D3 receptor A/0.570
3w0jT08Vitamin D3 receptor/0.558
4fhh0U3Vitamin D3 receptor A/0.557
2zl9VDAVitamin D3 receptor/0.555
2hb7O1CVitamin D3 receptor/0.554
4g20484Vitamin D3 receptor A/0.554
1s19MC9Vitamin D3 receptor/0.550
2zlaVDBVitamin D3 receptor/0.546
4g2h0VQVitamin D3 receptor A/0.546
2zlcVDXVitamin D3 receptor/0.545
3vrwYS5Vitamin D3 receptor/0.544
4iteTEYVitamin D3 receptor/0.542
3kpzZNEVitamin D3 receptor/0.540
1rk3VDXVitamin D3 receptor/0.537
3vrvYSDVitamin D3 receptor/0.537
3w0aDS5Vitamin D3 receptor/0.537
3vt5YI2Vitamin D3 receptor/0.536
3vt65YIVitamin D3 receptor/0.535
1txiTX5Vitamin D3 receptor/0.534
2o4rVD5Vitamin D3 receptor/0.534
4itfTFYVitamin D3 receptor/0.531
4rujVDXVitamin D3 receptor A/0.531
1rkhVD2Vitamin D3 receptor/0.530
3w5rLOAVitamin D3 receptor/0.529
1db1VDXVitamin D3 receptor/0.528
2hasC3OVitamin D3 receptor/0.527
1rkgVD1Vitamin D3 receptor/0.525
3vruYS3Vitamin D3 receptor/0.525
3a783EVVitamin D3 receptor/0.522
3vt3VDXVitamin D3 receptor/0.522
3dr1C5DVitamin D3 receptor A/0.521
3vt45YIVitamin D3 receptor/0.519
4q0a4OAVitamin D3 receptor A/0.519
1ie9VDXVitamin D3 receptor/0.517
2harOCCVitamin D3 receptor/0.516
3vtcTK3Vitamin D3 receptor/0.516
4g1d0VKVitamin D3 receptor A/0.516
2hamC33Vitamin D3 receptor/0.514
3m7rVDXVitamin D3 receptor/0.510
3w5tLHPVitamin D3 receptor/0.508
1ie8KH1Vitamin D3 receptor/0.507
2hb8MVDVitamin D3 receptor/0.506
2o4jVD4Vitamin D3 receptor/0.505
3vtbTKAVitamin D3 receptor/0.504
3w0hW12Vitamin D3 receptor/0.504
3vtdTKDVitamin D3 receptor/0.503
3w0yDS4Vitamin D3 receptor/0.503
3vrtYS2Vitamin D3 receptor/0.502
4fhi0S4Vitamin D3 receptor A/0.502
3w0iO11Vitamin D3 receptor/0.497
1s0zEB1Vitamin D3 receptor/0.496
3w0c6DSVitamin D3 receptor/0.493
3w5p4OAVitamin D3 receptor/0.492
1rjkVDZVitamin D3 receptor/0.489
3w0gW07Vitamin D3 receptor/0.488
3w5q3KLVitamin D3 receptor/0.481