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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4i3zADPCyclin-dependent kinase 22.7.11.22

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4i3zADPCyclin-dependent kinase 22.7.11.221.000
4ii5ADPCyclin-dependent kinase 22.7.11.220.568
4eooATPCyclin-dependent kinase 22.7.11.220.525
1qmzATPCyclin-dependent kinase 22.7.11.220.519
4qnyANPMitogen activated protein kinase, putative/0.503
5eg3ACPFibroblast growth factor receptor 2/0.477
3c4wATPRhodopsin kinase/0.467
1j1cADPGlycogen synthase kinase-3 beta2.7.11.260.463
2cjmATPCyclin-dependent kinase 22.7.11.220.461
3c4zADPRhodopsin kinase/0.455
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.450
3i60E86Mitogen-activated protein kinase 12.7.11.240.450
4fv6E57Mitogen-activated protein kinase 12.7.11.240.442