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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4ho2THMGlucose-1-phosphate thymidylyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4ho2THMGlucose-1-phosphate thymidylyltransferase/1.000
1h5rTHMGlucose-1-phosphate thymidylyltransferase 1/0.620
1h5sTMPGlucose-1-phosphate thymidylyltransferase 1/0.585
4ho5DAUGlucose-1-phosphate thymidylyltransferase/0.560
4ho3TTPGlucose-1-phosphate thymidylyltransferase/0.557
1iinUPGGlucose-1-phosphate thymidylyltransferase2.7.7.240.552
1g3lTRHGlucose-1-phosphate thymidylyltransferase/0.551
4ho9GDUGlucose-1-phosphate thymidylyltransferase/0.538
1h5tDAUGlucose-1-phosphate thymidylyltransferase 1/0.537
4ho8UPGGlucose-1-phosphate thymidylyltransferase/0.526
5ifyTRHGlucose-1-phosphate thymidylyltransferase/0.509
1mp5UPGGlucose-1-phosphate thymidylyltransferase2.7.7.240.500
1mp4UPGGlucose-1-phosphate thymidylyltransferase/0.463
1g1lDAUGlucose-1-phosphate thymidylyltransferase/0.455
4g3sUD1Bifunctional protein GlmU/0.452
3d8vUD1Bifunctional protein GlmU/0.450
3dj4UD1Bifunctional protein GlmU/0.446
1owlFADDeoxyribodipyrimidine photo-lyase4.1.99.30.440