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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4h4o506Gag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4h4o506Gag-Pol polyprotein2.7.7.491.000
4h4m494Gag-Pol polyprotein2.7.7.490.662
3dyaPZLGag-Pol polyprotein2.7.7.490.556
4rw4494Gag-Pol polyprotein2.7.7.490.554
4rw6494Gag-Pol polyprotein2.7.7.490.546
3c6uM22Gag-Pol polyprotein2.7.7.490.528
4mfb29TGag-Pol polyprotein2.7.7.490.521
2wonZZEGag-Pol polyprotein2.7.7.490.519
3c6tM14Gag-Pol polyprotein2.7.7.490.515
2be2R22Gag-Pol polyprotein2.7.7.490.513
4lsl1YQGag-Pol polyprotein2.7.7.490.511
3t1a5MAGag-Pol polyprotein2.7.7.490.509
3t195MAGag-Pol polyprotein2.7.7.490.503
3dokGWJPol protein/0.499
3drpR8EGag-Pol polyprotein2.7.7.490.492
3lakKR1Gag-Pol polyprotein2.7.7.490.484
3lalKRVGag-Pol polyprotein2.7.7.490.484
2ynfWHUGag-Pol polyprotein2.7.7.490.482
2b5j3ACGag-Pol polyprotein2.7.7.490.480
3dmjGWEPol protein/0.476
3tamM06Gag-Pol polyprotein2.7.7.490.474
2ynhEURGag-Pol polyprotein2.7.7.490.471
3drrR8EGag-Pol polyprotein2.7.7.490.459
3dlgGWEGag-Pol polyprotein2.7.7.490.458
3is9AC7Gag-Pol polyprotein2.7.7.490.457
3dolGWIPol protein/0.448