Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4gvs | F4M | Methenyltetrahydromethanopterin cyclohydrolase | 3.5.4.27 |
PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
---|---|---|---|---|---|
4gvs | F4M | Methenyltetrahydromethanopterin cyclohydrolase | 3.5.4.27 | 1.000 | |
4gvq | N4M | Methenyltetrahydromethanopterin cyclohydrolase | 3.5.4.27 | 0.561 | |
1dgf | NDP | Catalase | 1.11.1.6 | 0.466 | |
2yne | YNE | Glycylpeptide N-tetradecanoyltransferase | / | 0.464 | |
2z3u | CRR | Cytochrome P450 | / | 0.445 | |
1uho | VDN | cGMP-specific 3',5'-cyclic phosphodiesterase | / | 0.441 | |
5d5a | CAU | Beta-2 adrenergic receptor | / | 0.441 | |
4oex | 5EO | cGMP-specific 3',5'-cyclic phosphodiesterase | / | 0.440 |