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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4gqlR47Macrophage metalloelastase3.4.24.65

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4gqlR47Macrophage metalloelastase3.4.24.651.000
3ts4EEGMacrophage metalloelastase3.4.24.650.665
3lilEEAMacrophage metalloelastase3.4.24.650.642
2wo9068Macrophage metalloelastase3.4.24.650.599
2woa576Macrophage metalloelastase3.4.24.650.595
3ljgEEFMacrophage metalloelastase3.4.24.650.587
3i7i518Collagenase 33.4.240.585
4gr0R4BMacrophage metalloelastase3.4.24.650.584
2hu637AMacrophage metalloelastase3.4.24.650.583
4i03L88Macrophage metalloelastase3.4.24.650.573
3tskQEGMacrophage metalloelastase3.4.24.650.572
2wo8077Macrophage metalloelastase3.4.24.650.569
3likEEGMacrophage metalloelastase3.4.24.650.567
1caqDPSStromelysin-13.4.24.170.565
1b8yIN7Stromelysin-13.4.24.170.562
1uttCP8Macrophage metalloelastase3.4.24.650.562
3kry3KRCollagenase 33.4.240.551
4a7b3W4Collagenase 33.4.240.546
1ztq033Collagenase 33.4.240.544
3kec3KECollagenase 33.4.240.541
3kej3EJCollagenase 33.4.240.541
1cizDPSStromelysin-13.4.24.170.530
4gr3R45Macrophage metalloelastase3.4.24.650.530
2yig5ELCollagenase 33.4.240.526
4a7b3W5Collagenase 33.4.240.522
4guyKLJMacrophage metalloelastase3.4.24.650.520
1xucPB3Collagenase 33.4.240.512
1hy7MBSStromelysin-13.4.24.170.508
3kek3EKCollagenase 33.4.240.504
1xurPB5Collagenase 33.4.240.502
1c8tTR1Stromelysin-13.4.24.170.500
1xudPB4Collagenase 33.4.240.499
3i7g732Collagenase 33.4.240.497
1youPFDCollagenase 33.4.240.496
2ovx4MRMatrix metalloproteinase-93.4.24.350.493
2ow9SP6Collagenase 33.4.240.492
2d1nFA4Collagenase 33.4.240.476
3o2x3O2Collagenase 33.4.240.470
1hovI5272 kDa type IV collagenase3.4.24.240.463
2ow17MRMatrix metalloproteinase-93.4.24.350.461
2zb3NDPProstaglandin reductase 21.3.1.480.453
4ri1ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase2.3.1.2020.450
3gw9VNILanosterol 14-alpha-demethylase/0.449
4fidGDPG protein alpha subunit, putative/0.447
1rneC60Renin3.4.23.150.446
3ol5SAWCamphor 5-monooxygenase1.14.15.10.446
2ykiYKIHeat shock protein HSP 90-alpha/0.445
2ykjYKJHeat shock protein HSP 90-alpha/0.445
2prh238Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.444
4d89BXDBeta-secretase 13.4.23.460.441
3fqk79ZGenome polyprotein2.7.7.480.440
3gyuDL7Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily/0.440
3pqbVGPPutative oxidoreductase/0.440
4fco0U4Beta-secretase 13.4.23.460.440
4g3jVNTLanosterol 14-alpha-demethylase/0.440
5dqrFAD7-hydroxymethyl chlorophyll a reductase, chloroplastic1.17.7.20.440