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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4gpbGFPGlycogen phosphorylase, muscle form2.4.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4gpbGFPGlycogen phosphorylase, muscle form2.4.1.11.000
5gpbGPMGlycogen phosphorylase, muscle form2.4.1.10.735
2qn7HBZGlycogen phosphorylase, muscle form2.4.1.10.534
4el5D1MGlycogen phosphorylase, muscle form2.4.1.10.516
3clrFADElectron transfer flavoprotein subunit alpha/0.471
1bsvNDPGDP-L-fucose synthase/0.470
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.470
3clsFADElectron transfer flavoprotein subunit alpha/0.469
3cluFADElectron transfer flavoprotein subunit alpha/0.466
3dghFADThioredoxin reductase 1, mitochondrial1.8.1.90.461
1nhpFADNADH peroxidase1.11.1.10.460
4ambDUDPutative glycosyl transferase/0.457
4uyf73BBromodomain-containing protein 2/0.457
4q71FADBifunctional protein PutA/0.456
3dh9FADThioredoxin reductase 1, mitochondrial1.8.1.90.454
3tjzGNPADP-ribosylation factor 1/0.453
1xe55FEPlasmepsin-23.4.23.390.452
4rflNDPGlycerol-1-phosphate dehydrogenase [NAD(P)+]/0.452
2gjlFMNNitronate monooxygenase1.13.12.160.451
2gv8NDPThiol-specific monooxygenase1.14.130.450
1gqtACPRibokinase/0.449
3ijoB4DGlutamate receptor 2/0.449
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.449
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.448
4n9iPCGCatabolite expression activator/0.448
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.447
2r9zFADGlutathione amide reductase/0.447
2zjmF1MBeta-secretase 13.4.23.460.447
4xguADPPutative pachytene checkpoint protein 2/0.447
1kqnNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.446
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.446
2qirCOAAminoglycoside 6-N-acetyltransferase type Ib11/0.446
5agaANPDNA polymerase theta/0.446
1nhqFADNADH peroxidase1.11.1.10.445
2c54NADGDP-mannose 3,5-epimerase5.1.3.180.445
4f9fGDPPutative glycosyltransferase/0.445
2vwqNAPGlucose 1-dehydrogenase/0.444
3d3wNAPL-xylulose reductase1.1.1.100.444
4bftZVTPantothenate kinase2.7.1.330.444
1xdpATPPolyphosphate kinase/0.443
4bcaFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.442
1f8wFADNADH peroxidase1.11.1.10.441
1w6hTITPlasmepsin-23.4.23.390.441
1zk7FADMercuric reductase1.16.1.10.441
2j3nFADThioredoxin reductase 1, cytoplasmic1.8.1.90.441
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.441
4yaw2AMNADPH--cytochrome P450 reductase/0.441
1lbcCYZGlutamate receptor 2/0.440
1udaUFGUDP-glucose 4-epimerase5.1.3.20.440
2bi8FADUDP-galactopyranose mutase5.4.99.90.440
2gmhFADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial1.5.5.10.440
3iaaTYDCalG2/0.440
4m83ERYOleandomycin glycosyltransferase2.4.10.440
5a3cNADSIR2 family protein/0.440