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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.291.000
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.753
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.663
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.638
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.626
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.594
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.590
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.586
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.579
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.290.576
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.576
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.563
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.559
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.557
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.554
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.554
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.549
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.536
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.532
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.516
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.513
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.512
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.510
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.510
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.493
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.491
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.478
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.467
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.466
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.457
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.453
2qak1UNGag-Pol polyprotein3.4.23.160.451
3sn6P0GBeta-2 adrenergic receptor/0.450
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.448
1sm2STUTyrosine-protein kinase ITK/TSK2.7.10.20.445
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.445
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.290.441
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.440