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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4gd9BTNStreptavidin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4gd9BTNStreptavidin/1.000
1srjNABStreptavidin/0.488
1swnBTNStreptavidin/0.482
1swpBTNStreptavidin/0.475
1n9mBTNStreptavidin/0.473
2jgsBTNAvidin/0.471
1rxjBNIStreptavidin/0.462
1srgMHBStreptavidin/0.457
1nc9IMIStreptavidin/0.456
2rtgBTNStreptavidin/0.454
2zscBTNTamavidin2/0.453
1sriDMBStreptavidin/0.451
2rtoIMIStreptavidin/0.451
4gdaBTNStreptavidin/0.449
4qa0SHHHistone deacetylase 83.5.1.980.448
1sreHABStreptavidin/0.446
1sweBTNStreptavidin/0.444
1swgBTNStreptavidin/0.443
2ohhFMNType A flavoprotein FprA10.441
3gjwGJWPoly [ADP-ribose] polymerase 12.4.2.300.440
4bfvZVVPantothenate kinase2.7.1.330.440