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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4g210VPVitamin D3 receptor A

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4g210VPVitamin D3 receptor A/1.000
4fhh0U3Vitamin D3 receptor A/0.781
4g1z0VPVitamin D3 receptor A/0.771
4g2h0VQVitamin D3 receptor A/0.746
2hbhXE4Vitamin D3 receptor A/0.741
4g1d0VKVitamin D3 receptor A/0.730
2hcdBIVVitamin D3 receptor A/0.729
4ia1BIVVitamin D3 receptor A/0.711
4rupH97Vitamin D3 receptor A/0.708
2hc4VDXVitamin D3 receptor A/0.695
3dr1C5DVitamin D3 receptor A/0.690
4g1y0VOVitamin D3 receptor A/0.678
4ia2BIVVitamin D3 receptor A/0.678
2o4rVD5Vitamin D3 receptor/0.670
4ia3BIVVitamin D3 receptor A/0.668
4fhi0S4Vitamin D3 receptor A/0.663
2zlcVDXVitamin D3 receptor/0.662
1rkhVD2Vitamin D3 receptor/0.654
4ruoBIVVitamin D3 receptor A/0.654
3w0jT08Vitamin D3 receptor/0.651
4iteTEYVitamin D3 receptor/0.651
2zl9VDAVitamin D3 receptor/0.647
1rkgVD1Vitamin D3 receptor/0.645
3vruYS3Vitamin D3 receptor/0.645
3vt5YI2Vitamin D3 receptor/0.645
1rk3VDXVitamin D3 receptor/0.644
1txiTX5Vitamin D3 receptor/0.644
3vtcTK3Vitamin D3 receptor/0.644
2harOCCVitamin D3 receptor/0.643
3vt65YIVitamin D3 receptor/0.641
4itfTFYVitamin D3 receptor/0.641
2hb7O1CVitamin D3 receptor/0.640
2zlaVDBVitamin D3 receptor/0.640
3a783EVVitamin D3 receptor/0.640
3w0aDS5Vitamin D3 receptor/0.640
1s19MC9Vitamin D3 receptor/0.639
3vrvYSDVitamin D3 receptor/0.639
3kpzZNEVitamin D3 receptor/0.638
3w5rLOAVitamin D3 receptor/0.637
4ia7BIVVitamin D3 receptor A/0.635
3vrwYS5Vitamin D3 receptor/0.631
3w5tLHPVitamin D3 receptor/0.630
1db1VDXVitamin D3 receptor/0.628
2hasC3OVitamin D3 receptor/0.628
3vtbTKAVitamin D3 receptor/0.628
2o4jVD4Vitamin D3 receptor/0.619
2hb8MVDVitamin D3 receptor/0.618
1rjkVDZVitamin D3 receptor/0.617
3vt3VDXVitamin D3 receptor/0.617
3vt8YI3Vitamin D3 receptor/0.616
3w0yDS4Vitamin D3 receptor/0.616
1ie8KH1Vitamin D3 receptor/0.614
3vt45YIVitamin D3 receptor/0.612
2hamC33Vitamin D3 receptor/0.611
3vtdTKDVitamin D3 receptor/0.610
3w0gW07Vitamin D3 receptor/0.608
3vrtYS2Vitamin D3 receptor/0.606
3w5p4OAVitamin D3 receptor/0.606
3vt7VDXVitamin D3 receptor/0.603
1s0zEB1Vitamin D3 receptor/0.600
1ie9VDXVitamin D3 receptor/0.598
3w0hW12Vitamin D3 receptor/0.597
3vt9YI4Vitamin D3 receptor/0.596
3w0c6DSVitamin D3 receptor/0.594
4g20484Vitamin D3 receptor A/0.588
3w0iO11Vitamin D3 receptor/0.580
3m7rVDXVitamin D3 receptor/0.577
3w5q3KLVitamin D3 receptor/0.566
4rujVDXVitamin D3 receptor A/0.565
4q0a4OAVitamin D3 receptor A/0.563
4g2i0VQVitamin D3 receptor/0.499
2nq8ZIDEnoyl-ACP reductase/0.467
4l9kEHFSerum albumin/0.459
2jn3JN3Fatty acid-binding protein, liver/0.446
4b7sQLECytochrome P450 monooxygenase PikC/0.444
4bb6HD1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441