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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4g20484Vitamin D3 receptor A

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4g20484Vitamin D3 receptor A/1.000
4g1z0VPVitamin D3 receptor A/0.676
4rupH97Vitamin D3 receptor A/0.665
4g1y0VOVitamin D3 receptor A/0.664
3w0jT08Vitamin D3 receptor/0.663
1s19MC9Vitamin D3 receptor/0.657
4g1d0VKVitamin D3 receptor A/0.655
4ia2BIVVitamin D3 receptor A/0.654
4ia7BIVVitamin D3 receptor A/0.651
3vrvYSDVitamin D3 receptor/0.650
3vt3VDXVitamin D3 receptor/0.648
3vruYS3Vitamin D3 receptor/0.647
2zlaVDBVitamin D3 receptor/0.646
4ia1BIVVitamin D3 receptor A/0.646
2hc4VDXVitamin D3 receptor A/0.644
4ia3BIVVitamin D3 receptor A/0.643
1rk3VDXVitamin D3 receptor/0.641
2zl9VDAVitamin D3 receptor/0.640
2o4rVD5Vitamin D3 receptor/0.633
1rkgVD1Vitamin D3 receptor/0.630
2zlcVDXVitamin D3 receptor/0.628
1txiTX5Vitamin D3 receptor/0.627
3vrwYS5Vitamin D3 receptor/0.627
2hamC33Vitamin D3 receptor/0.625
3vt65YIVitamin D3 receptor/0.623
4itfTFYVitamin D3 receptor/0.621
3a783EVVitamin D3 receptor/0.619
2hb7O1CVitamin D3 receptor/0.617
2hcdBIVVitamin D3 receptor A/0.617
3w0hW12Vitamin D3 receptor/0.617
4q0a4OAVitamin D3 receptor A/0.617
2hb8MVDVitamin D3 receptor/0.616
3vtcTK3Vitamin D3 receptor/0.616
3vt5YI2Vitamin D3 receptor/0.615
1rkhVD2Vitamin D3 receptor/0.614
3kpzZNEVitamin D3 receptor/0.613
4rujVDXVitamin D3 receptor A/0.613
1db1VDXVitamin D3 receptor/0.609
3w0iO11Vitamin D3 receptor/0.609
3vt9YI4Vitamin D3 receptor/0.608
4g2h0VQVitamin D3 receptor A/0.604
3w0gW07Vitamin D3 receptor/0.603
2o4jVD4Vitamin D3 receptor/0.602
4iteTEYVitamin D3 receptor/0.601
2harOCCVitamin D3 receptor/0.600
4fhi0S4Vitamin D3 receptor A/0.600
3vt8YI3Vitamin D3 receptor/0.596
3w5rLOAVitamin D3 receptor/0.595
3vt45YIVitamin D3 receptor/0.593
3vt7VDXVitamin D3 receptor/0.591
1rjkVDZVitamin D3 receptor/0.587
2hasC3OVitamin D3 receptor/0.587
3w0yDS4Vitamin D3 receptor/0.587
3vtdTKDVitamin D3 receptor/0.585
3vtbTKAVitamin D3 receptor/0.583
2hbhXE4Vitamin D3 receptor A/0.580
3w0aDS5Vitamin D3 receptor/0.580
4g210VPVitamin D3 receptor A/0.580
1ie8KH1Vitamin D3 receptor/0.579
1s0zEB1Vitamin D3 receptor/0.574
3w5p4OAVitamin D3 receptor/0.574
4ruoBIVVitamin D3 receptor A/0.573
1ie9VDXVitamin D3 receptor/0.572
3vrtYS2Vitamin D3 receptor/0.570
4fhh0U3Vitamin D3 receptor A/0.570
3dr1C5DVitamin D3 receptor A/0.566
3w5tLHPVitamin D3 receptor/0.565
3m7rVDXVitamin D3 receptor/0.557
3w5q3KLVitamin D3 receptor/0.555
3w0c6DSVitamin D3 receptor/0.543
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.460
4bb6HD1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.460
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.458
4hfr14MCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.455
4g2i0VQVitamin D3 receptor/0.449