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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4fhh0U3Vitamin D3 receptor A

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4fhh0U3Vitamin D3 receptor A/1.000
4g210VPVitamin D3 receptor A/0.786
2hbhXE4Vitamin D3 receptor A/0.777
4g1z0VPVitamin D3 receptor A/0.747
2hcdBIVVitamin D3 receptor A/0.743
4g2h0VQVitamin D3 receptor A/0.739
4ia1BIVVitamin D3 receptor A/0.730
4rupH97Vitamin D3 receptor A/0.714
2hc4VDXVitamin D3 receptor A/0.708
3vt5YI2Vitamin D3 receptor/0.700
4g1y0VOVitamin D3 receptor A/0.700
4fhi0S4Vitamin D3 receptor A/0.695
2zlcVDXVitamin D3 receptor/0.679
4g1d0VKVitamin D3 receptor A/0.679
1txiTX5Vitamin D3 receptor/0.674
3dr1C5DVitamin D3 receptor A/0.674
3w0jT08Vitamin D3 receptor/0.670
2zl9VDAVitamin D3 receptor/0.666
4ruoBIVVitamin D3 receptor A/0.666
4iteTEYVitamin D3 receptor/0.662
3vrwYS5Vitamin D3 receptor/0.660
3vrvYSDVitamin D3 receptor/0.659
4ia2BIVVitamin D3 receptor A/0.657
1db1VDXVitamin D3 receptor/0.654
4ia3BIVVitamin D3 receptor A/0.649
1rk3VDXVitamin D3 receptor/0.645
1s19MC9Vitamin D3 receptor/0.644
3vt3VDXVitamin D3 receptor/0.644
3w0aDS5Vitamin D3 receptor/0.644
4itfTFYVitamin D3 receptor/0.643
3a783EVVitamin D3 receptor/0.642
3vt65YIVitamin D3 receptor/0.642
3kpzZNEVitamin D3 receptor/0.641
1rkhVD2Vitamin D3 receptor/0.639
2hb7O1CVitamin D3 receptor/0.639
2o4rVD5Vitamin D3 receptor/0.638
2harOCCVitamin D3 receptor/0.637
3vruYS3Vitamin D3 receptor/0.637
4ia7BIVVitamin D3 receptor A/0.637
4rujVDXVitamin D3 receptor A/0.637
1ie8KH1Vitamin D3 receptor/0.636
2hb8MVDVitamin D3 receptor/0.636
3vt45YIVitamin D3 receptor/0.636
2zlaVDBVitamin D3 receptor/0.635
3w0c6DSVitamin D3 receptor/0.635
3vtcTK3Vitamin D3 receptor/0.634
1rkgVD1Vitamin D3 receptor/0.632
2hasC3OVitamin D3 receptor/0.630
3w0gW07Vitamin D3 receptor/0.630
3w5tLHPVitamin D3 receptor/0.630
2hamC33Vitamin D3 receptor/0.628
3vtbTKAVitamin D3 receptor/0.628
3w5rLOAVitamin D3 receptor/0.627
2o4jVD4Vitamin D3 receptor/0.626
3vrtYS2Vitamin D3 receptor/0.623
3w0iO11Vitamin D3 receptor/0.619
1s0zEB1Vitamin D3 receptor/0.615
3vt7VDXVitamin D3 receptor/0.615
1ie9VDXVitamin D3 receptor/0.613
3vtdTKDVitamin D3 receptor/0.611
1rjkVDZVitamin D3 receptor/0.609
3w0hW12Vitamin D3 receptor/0.608
3vt9YI4Vitamin D3 receptor/0.604
3w0yDS4Vitamin D3 receptor/0.600
3m7rVDXVitamin D3 receptor/0.596
3w5p4OAVitamin D3 receptor/0.596
4g20484Vitamin D3 receptor A/0.578
4q0a4OAVitamin D3 receptor A/0.573
3w5q3KLVitamin D3 receptor/0.569
3vt8YI3Vitamin D3 receptor/0.469
4hfr14MCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.461
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.454
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.453
2q9fC3SCholesterol 24-hydroxylase/0.449
2nq8ZIDEnoyl-ACP reductase/0.447
4l9kEHFSerum albumin/0.447
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.446
2hwrDRDPeroxisome proliferator-activated receptor gamma/0.446
3l0lHC3Nuclear receptor ROR-gamma/0.446
1vrwNAIEnoyl-ACP reductase/0.443
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443
1zgyBRLPeroxisome proliferator-activated receptor gamma/0.442
2hw2RFPRifampin ADP-ribosyl transferase/0.442
3p3zP3ZPutative cytochrome P450/0.441
4b7sQLECytochrome P450 monooxygenase PikC/0.441
4enhFVXCholesterol 24-hydroxylase/0.440