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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4fdnFADDecaprenylphosphoryl-beta-D-ribose oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4fdnFADDecaprenylphosphoryl-beta-D-ribose oxidase/1.000
4fehFADDecaprenylphosphoryl-beta-D-ribose oxidase/0.849
4fdpFADDecaprenylphosphoryl-beta-D-ribose oxidase/0.550
4f4qFADDecaprenylphosphoryl-beta-D-ribose oxidase/0.546
2uuvFADAlkyldihydroxyacetonephosphate synthase2.5.1.260.498
3pm9FADPutative oxidoreductase/0.470
4bc7FADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.465
4bcaFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.451
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.444
1t9gFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.443
3b70NAPEnoyl reductase LovC10.443
3gqvNAPEnoyl reductase LovC10.441
2q4wFADCytokinin dehydrogenase 71.5.99.120.440