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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4fc00T2Serine/threonine-protein kinase B-raf2.7.11.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4fc00T2Serine/threonine-protein kinase B-raf2.7.11.11.000
5hi2BAXSerine/threonine-protein kinase B-raf2.7.11.10.608
4ksp1SUSerine/threonine-protein kinase B-raf2.7.11.10.585
3hv5R24Mitogen-activated protein kinase 14/0.555
4c8b0LIReceptor-interacting serine/threonine-protein kinase 22.7.11.10.524
2hyySTITyrosine-protein kinase ABL12.7.10.20.513
3kq7KQ7Mitogen-activated protein kinase 14/0.513
4agwNG7Proto-oncogene tyrosine-protein kinase Src2.7.10.20.510
3dtwA96Vascular endothelial growth factor receptor 22.7.10.10.508
3b8q900Vascular endothelial growth factor receptor 22.7.10.10.505
2oiqSTIProto-oncogene tyrosine-protein kinase Src2.7.10.20.499
3efl706Vascular endothelial growth factor receptor 22.7.10.10.496
4o2z046Mitogen-activated protein kinase/0.496
4aa0AA0Mitogen-activated protein kinase 14/0.495
2og81N8Tyrosine-protein kinase Lck2.7.10.20.493
3vnt0JAVascular endothelial growth factor receptor 22.7.10.10.488
4aseAV9Vascular endothelial growth factor receptor 22.7.10.10.484
2qu6857Vascular endothelial growth factor receptor 22.7.10.10.478
1iepSTITyrosine-protein kinase ABL12.7.10.20.475
4eyjN61Mitogen-activated protein kinase 132.7.11.240.468
3cp9C19Vascular endothelial growth factor receptor 22.7.10.10.463
3hng8STVascular endothelial growth factor receptor 12.7.10.10.454
2xir00JVascular endothelial growth factor receptor 22.7.10.10.445
3eta351Insulin receptor2.7.10.10.445
3gcsBAXMitogen-activated protein kinase 14/0.440