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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4eo3FMNBacterioferritin comigratory protein/NADH dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4eo3FMNBacterioferritin comigratory protein/NADH dehydrogenase/1.000
3ge6FMNNitroreductase/0.518
1icuFMNOxygen-insensitive NAD(P)H nitroreductase/0.500
1necFMNOxygen-insensitive NAD(P)H nitroreductase10.483
3e39FMNNitroreductase/0.481
1kqcFMNOxygen-insensitive NAD(P)H nitroreductase/0.464
1kqdFMNOxygen-insensitive NAD(P)H nitroreductase/0.458
1ds7FMNOxygen-insensitive NAD(P)H nitroreductase/0.456
3qdlFMNOxygen-insensitive NADPH nitroreductase/0.456
3x21FMNOxygen-insensitive NAD(P)H nitroreductase/0.447
4qlyFMNEnone reductase CLA-ER/0.447
1kqbFMNOxygen-insensitive NAD(P)H nitroreductase/0.444
3eofFMNPutative oxidase/0.444
2freFMNNAD(P)H-flavin oxidoreductase/0.443