sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4edy | 9PQ | Hematopoietic prostaglandin D synthase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4edy | 9PQ | Hematopoietic prostaglandin D synthase | / | 1.000 | |
| 3kxo | KXO | Hematopoietic prostaglandin D synthase | / | 0.698 | |
| 2vcq | D25 | Hematopoietic prostaglandin D synthase | / | 0.630 | |
| 4edz | 0O5 | Hematopoietic prostaglandin D synthase | / | 0.627 | |
| 3vi7 | CBD | Hematopoietic prostaglandin D synthase | / | 0.607 | |
| 2vcz | VC3 | Hematopoietic prostaglandin D synthase | / | 0.603 | |
| 2vcw | ZZA | Hematopoietic prostaglandin D synthase | / | 0.587 | |
| 3vi5 | M4M | Hematopoietic prostaglandin D synthase | / | 0.583 | |
| 2vd0 | D27 | Hematopoietic prostaglandin D synthase | / | 0.579 | |
| 2vcx | D26 | Hematopoietic prostaglandin D synthase | / | 0.567 | |
| 1gal | FAD | Glucose oxidase | 1.1.3.4 | 0.477 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.464 | |
| 3pqb | VGP | Putative oxidoreductase | / | 0.457 | |
| 1efv | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 0.454 | |
| 3tfu | PL8 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | 2.6.1.62 | 0.454 | |
| 2a1u | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 0.452 | |
| 1w6h | TIT | Plasmepsin-2 | 3.4.23.39 | 0.446 | |
| 1kqw | RTL | Cellular retinol-binding protein type II | / | 0.445 | |
| 4amb | DUD | Putative glycosyl transferase | / | 0.443 | |
| 4bbh | YBN | Glycylpeptide N-tetradecanoyltransferase | / | 0.443 | |
| 4xyb | NDP | Formate dehydrogenase | / | 0.443 | |
| 2ywl | FAD | Thioredoxin reductase related protein | / | 0.441 | |
| 3q9b | B3N | Acetylpolyamine amidohydrolase | / | 0.441 | |
| 2wqe | ADP | Aurora kinase A | 2.7.11.1 | 0.440 | |
| 4pkl | 1GH | Uncharacterized protein | / | 0.440 |