sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4e2d | FMN | Dehydrogenase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4e2d | FMN | Dehydrogenase | / | 1.000 | |
| 3atz | FMN | Prostaglandin F2a synthase | / | 0.671 | |
| 4e2b | FMN | Dehydrogenase | / | 0.663 | |
| 3aty | FMN | Prostaglandin F2a synthase | / | 0.639 | |
| 4jic | FMN | GTN Reductase | / | 0.566 | |
| 3f03 | FMN | Pentaerythritol tetranitrate reductase | / | 0.565 | |
| 4rnu | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.558 | |
| 1h63 | FMN | Pentaerythritol tetranitrate reductase | / | 0.550 | |
| 3p82 | FMN | Pentaerythritol tetranitrate reductase | / | 0.547 | |
| 1h50 | FMN | Pentaerythritol tetranitrate reductase | / | 0.544 | |
| 3p74 | FMN | Pentaerythritol tetranitrate reductase | / | 0.543 | |
| 2abb | FMN | Pentaerythritol tetranitrate reductase | / | 0.541 | |
| 2hs8 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.541 | |
| 3hgo | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.540 | |
| 1vyr | FMN | Pentaerythritol tetranitrate reductase | / | 0.536 | |
| 4a3u | FMN | NADH:flavin oxidoreductase/NADH oxidase | / | 0.525 | |
| 1icq | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.524 | |
| 1bwl | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.517 | |
| 4tmb | FMN | Old yellow enzyme | / | 0.515 | |
| 3p67 | FMN | Pentaerythritol tetranitrate reductase | / | 0.513 | |
| 3p84 | FMN | Pentaerythritol tetranitrate reductase | / | 0.508 | |
| 3hgs | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.506 | |
| 1vji | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.504 | |
| 3hgr | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.503 | |
| 1h51 | FMN | Pentaerythritol tetranitrate reductase | / | 0.502 | |
| 4tmc | FMN | Old yellow enzyme | / | 0.502 | |
| 3gka | FMN | N-ethylmaleimide reductase | / | 0.500 | |
| 3p62 | FMN | Pentaerythritol tetranitrate reductase | / | 0.500 | |
| 1q45 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.494 | |
| 4rnv | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.493 | |
| 4h6k | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.492 | |
| 3p8j | FMN | Pentaerythritol tetranitrate reductase | / | 0.491 | |
| 1ics | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.487 | |
| 1oyc | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.486 | |
| 1bwk | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.483 | |
| 1icp | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.483 | |
| 1qbg | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.482 | |
| 5a4k | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.481 | |
| 1oya | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.478 | |
| 2q3r | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.478 | |
| 1h66 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.476 | |
| 1dxq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.472 | |
| 1gg5 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.472 | |
| 1kbo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.472 | |
| 2hs6 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.469 | |
| 3tjl | FMN | NADPH dehydrogenase | / | 0.469 | |
| 1d4a | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.463 | |
| 1kbq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.463 | |
| 3gfb | NAD | L-threonine 3-dehydrogenase | / | 0.462 | |
| 4awt | FMN | NADH:flavin oxidoreductase Sye1 | / | 0.461 | |
| 4m5p | FMN | NADPH dehydrogenase | / | 0.459 | |
| 4df2 | FMN | NADPH dehydrogenase | / | 0.458 | |
| 4ewn | 0VR | Imidazole glycerol phosphate synthase subunit HisF | 4.1.3 | 0.458 | |
| 4k7y | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.458 | |
| 3p8i | FMN | Pentaerythritol tetranitrate reductase | / | 0.455 | |
| 1bil | 0IU | Renin | 3.4.23.15 | 0.454 | |
| 4h8a | NAI | Ureidoglycolate dehydrogenase (NAD(+)) | 1.1.1.350 | 0.453 | |
| 4uwm | FMN | 3,6-diketocamphane 1,6 monooxygenase | 1.14.13 | 0.451 | |
| 1h69 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.450 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.449 | |
| 2y6f | M9F | Isopenicillin N synthase | 1.21.3.1 | 0.446 | |
| 3l5l | FMN | Xenobiotic reductase | / | 0.446 | |
| 4rnw | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.446 | |
| 4r81 | FMN | Predicted NADH dehydrogenase | / | 0.445 | |
| 4rvg | TYD | D-mycarose 3-C-methyltransferase | / | 0.445 | |
| 3etd | NDP | Glutamate dehydrogenase 1, mitochondrial | 1.4.1.3 | 0.444 | |
| 1ma0 | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.443 | |
| 1pqc | 444 | Oxysterols receptor LXR-beta | / | 0.443 | |
| 4b5n | FMN | NAD(P)H:flavin oxidoreductase Sye4 | / | 0.443 | |
| 2fw3 | BUI | Carnitine O-palmitoyltransferase 2, mitochondrial | 2.3.1.21 | 0.442 | |
| 1bws | NDP | GDP-L-fucose synthase | / | 0.441 | |
| 3in6 | FMN | Uncharacterized protein | / | 0.440 | |
| 4q71 | FAD | Bifunctional protein PutA | / | 0.440 |