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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4dlbNADS-(hydroxymethyl)glutathione dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4dlbNADS-(hydroxymethyl)glutathione dehydrogenase/1.000
4dl9NADS-(hydroxymethyl)glutathione dehydrogenase/0.629
4jjiNADAlcohol dehydrogenase class-3/0.596
1ma0NADAlcohol dehydrogenase class-31.1.1.10.561
3ukoNADAlcohol dehydrogenase class-3/0.561
4gl4NAIAlcohol dehydrogenase class-3/0.552
2fzeAPRAlcohol dehydrogenase class-31.1.1.10.524
1e3lNADAlcohol dehydrogenase 41.1.1.10.518
1adcPADAlcohol dehydrogenase E chain1.1.1.10.516
1adbCNDAlcohol dehydrogenase E chain1.1.1.10.504
1cdoNADAlcohol dehydrogenase 11.1.1.10.499
4c4oNADSADH/0.490
1ht0NADAlcohol dehydrogenase 1C1.1.1.10.489
2xaaNADSecondary alcohol dehydrogenase/0.488
1agnNADAlcohol dehydrogenase class 4 mu/sigma chain1.1.1.10.486
2jhfNADAlcohol dehydrogenase E chain1.1.1.10.483
1hszNADAlcohol dehydrogenase 1B1.1.1.10.480
1a71NADAlcohol dehydrogenase E chain1.1.1.10.472
1u3vNADAlcohol dehydrogenase 1B1.1.1.10.472
2oxiNADAlcohol dehydrogenase E chain1.1.1.10.472
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.472
4ng5NAJAlcohol dehydrogenase E chain1.1.1.10.472
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.469
4nfhNAJAlcohol dehydrogenase E chain1.1.1.10.468
1mp0NADAlcohol dehydrogenase class-31.1.1.10.464
3jv7NADSecondary alcohol dehydrogenase/0.461
1axgNADAlcohol dehydrogenase E chain1.1.1.10.460
1mgoNADAlcohol dehydrogenase E chain1.1.1.10.457
1f8fNADBenzyl alcohol dehydrogenase/0.449
1ldeNADAlcohol dehydrogenase E chain1.1.1.10.447
2fzwNADAlcohol dehydrogenase class-31.1.1.10.442
4cpdNADAlcohol dehydrogenase/0.440