scPDB - Distribution of Binding site Similarity values of 4dkj entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4dkj	SAH	Cytosine-specific methyltransferase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4dkj	SAH	Cytosine-specific methyltransferase	/	1.000
9mht	SAH	Modification methylase HhaI	2.1.1.37	0.546
2uyh	SAH	Modification methylase HhaI	2.1.1.37	0.525
7mht	SAH	Modification methylase HhaI	2.1.1.37	0.521
1skm	SAH	Modification methylase HhaI	2.1.1.37	0.510
2z6u	SAH	Modification methylase HhaI	2.1.1.37	0.502
2c7q	SAH	Modification methylase HhaI	2.1.1.37	0.498
4da4	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.486
5mht	SAH	Modification methylase HhaI	2.1.1.37	0.481
2hmy	SAM	Modification methylase HhaI	2.1.1.37	0.479
1mht	SAH	Modification methylase HhaI	2.1.1.37	0.478
8mht	SAH	Modification methylase HhaI	2.1.1.37	0.478
2zcj	SAH	Modification methylase HhaI	2.1.1.37	0.474
3mht	SAH	Modification methylase HhaI	2.1.1.37	0.467
4wxx	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.459
1fjx	SAH	Modification methylase HhaI	2.1.1.37	0.444