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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4dhyS41Glucokinase2.7.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4dhyS41Glucokinase2.7.1.21.000
3s41S41Glucokinase2.7.1.20.728
3vev0H4Glucokinase2.7.1.20.631
3imxB84Glucokinase2.7.1.20.573
4ixc1JDGlucokinase2.7.1.20.558
4iwv1J9Glucokinase2.7.1.20.540
3h1vTK1Glucokinase2.7.1.20.488
3a0iAJIGlucokinase2.7.1.20.485
3vf60H6Glucokinase2.7.1.20.476
4dch4DCGlucokinase2.7.1.20.476
4mlhVO2Glucokinase2.7.1.20.471
1xuoLA1Integrin alpha-L/0.442