scPDB - Distribution of Binding site Similarity values of 4dbc entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4dbc	3QP	Aspartate aminotransferase	2.6.1.1

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4dbc	3QP	Aspartate aminotransferase	2.6.1.1	1.000
3qpg	3QP	Aspartate aminotransferase	2.6.1.1	0.709
1cq6	PY4	Aspartate aminotransferase	2.6.1.1	0.545
1toi	HCI	Aspartate aminotransferase	2.6.1.1	0.543
1akb	PPD	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.537
1akc	PPE	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.524
1toj	HCI	Aspartate aminotransferase	2.6.1.1	0.516
1ivr	CBA	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.514
1maq	PGU	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.507
1cq8	PY6	Aspartate aminotransferase	2.6.1.1	0.498
1map	KET	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.498
1cq7	PY5	Aspartate aminotransferase	2.6.1.1	0.492
1asc	NPL	Aspartate aminotransferase	2.6.1.1	0.449