scPDB - Distribution of Binding site Similarity values of 4da4 entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4da4	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4da4	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	1.000
3pt9	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.479
3pt6	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.468
4wxx	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.458
9mht	SAH	Modification methylase HhaI	2.1.1.37	0.450
1skm	SAH	Modification methylase HhaI	2.1.1.37	0.448
4dkj	SAH	Cytosine-specific methyltransferase	/	0.447