scPDB - Distribution of Binding site Similarity values of 4d9m entry / Site 1

Distribution of Binding site similarity measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4d9m	0JO	Diaminopropionate ammonia-lyase	4.3.1.15

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4d9m	0JO	Diaminopropionate ammonia-lyase	4.3.1.15	1.000
3pmy	41L	Endothiapepsin	3.4.23.22	0.454
4y45	F91	Endothiapepsin	3.4.23.22	0.448
3t7x	4SH	Endothiapepsin	3.4.23.22	0.446
3pww	ROC	Endothiapepsin	3.4.23.22	0.444
1xh9	R69	cAMP-dependent protein kinase catalytic subunit alpha	2.7.11.11	0.442
2v00	V15	Endothiapepsin	3.4.23.22	0.442
2web	PP4	Penicillopepsin-1	3.4.23.20	0.442
3pmu	F7L	Endothiapepsin	3.4.23.22	0.442
3dyl	PCG	High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A	/	0.441
3psy	RB9	Endothiapepsin	3.4.23.22	0.441
4iql	FMN	Enoyl-(Acyl-carrier-protein) reductase II	/	0.441
3t6i	NC9	Endothiapepsin	3.4.23.22	0.440