Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4cymGCPRas-related protein Rab-32

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4cymGCPRas-related protein Rab-32/1.000
2gilGTPRas-related protein Rab-6A/0.541
3oesGNPGTPase RhebL1/0.516
2ffqGSPRas-related protein Rab-6B/0.509
3e5hGNPRas-related protein Rab-28/0.506
2clsGTPRho-related GTP-binding protein Rho6/0.504
1xtsGTPGTP-binding protein Rheb/0.489
1yzqGNPRas-related protein Rab-6A/0.487
1zc3GNPRas-related protein Ral-A/0.485
1xtrGNPGTP-binding protein Rheb/0.475
1zbdGTPRas-related protein Rab-3A/0.470
3lawGNPRas-related protein Rab-7a/0.462
3lbnGNPGTPase HRas/0.460
3bbpGTPRas-related protein Rab-6A/0.457
1t91GTPRas-related protein Rab-7a/0.454
2fe4GDPRas-related protein Rab-6B/0.454
4lhwGNPRas-related protein Rab-8A/0.452
2x19GTPGTP-binding nuclear protein GSP1/CNR1/0.449
3tnfGNPRas-related protein Rab-8A/0.449
1zc4GNPRas-related protein Ral-A/0.448
3tklGTPRas-related protein Rab-1A/0.448
3nbzGTPGTP-binding nuclear protein Ran/0.447
1m7bGTPRho-related GTP-binding protein RhoE/0.445
2ov2GCPRas-related C3 botulinum toxin substrate 3/0.444
2zetGTPRas-related protein Rab-27B/0.441