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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4cr8NADN-acylmannosamine 1-dehydrogenase1.1.1.233

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4cr8NADN-acylmannosamine 1-dehydrogenase1.1.1.2331.000
1zemNADXylitol dehydrogenase/0.584
5js6NAD17-beta-hydroxysteroid dehydrogenase 141.1.10.570
4fn4NADShort chain dehydrogenase/0.560
3nugNADPyridoxal 4-dehydrogenase1.1.1.1070.559
4yr9NADL-threonine 3-dehydrogenase, mitochondrial1.1.1.1030.558
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.558
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.557
2hsdNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.555
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.554
3ak4NADNADH-dependent quinuclidinone reductase/0.549
3a1nNADNDP-sugar epimerase/0.546
3a4vNADNDP-sugar epimerase/0.546
4idgNADPutative UDP-glucose 4-epimerase/0.543
2aa3AP0L-lactate dehydrogenase/0.539
5jlaNADPutative short-chain dehydrogenase/reductase/0.539
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.538
1h5qNAPNADP-dependent mannitol dehydrogenase1.1.1.1380.537
3a28NADL-2,3-butanediol dehydrogenase1.1.1.760.537
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.536
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.536
1e3sNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.533
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.532
4fj2NAP17beta-hydroxysteroid dehydrogenase/0.532
3toxNAPPutative oxidoreductase/0.530
4nd2A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.530
1nffNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.528
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.528
3r3sNADPutative oxidoreductase/0.527
4nbuNAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.525
4ajp88NL-lactate dehydrogenase A chain1.1.1.270.524
4nbwNADShort-chain dehydrogenase/reductase SDR/0.524
3s55NADPutative short-chain dehydrogenase/reductase/0.522
3wdsNADNADH-dependent quinuclidinone reductase/0.521
5lc1NADL-threonine 3-dehydrogenase/0.521
4b79NADProbable short-chain dehydrogenase/0.519
2a92NAIL-lactate dehydrogenase/0.518
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.518
4gh5NADShort-chain dehydrogenase/reductase SDR/0.518
1nfrNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.517
3pgxNADUncharacterized NAD-dependent oxidoreductase MAP_4146/0.517
1sowNADL-lactate dehydrogenase1.1.1.270.515
3uxyNADShort-chain dehydrogenase/reductase SDR/0.515
3qwfNAP17beta-hydroxysteroid dehydrogenase/0.514
3gegNADShort-chain dehydrogenase/reductase SDR/0.513
4j7uNAPSepiapterin reductase1.1.1.1530.513
2ztmNADD(-)-3-hydroxybutyrate dehydrogenase/0.512
3ndrNADPyridoxal 4-dehydrogenase1.1.1.1070.511
1t2dNADL-lactate dehydrogenase1.1.1.270.510
2dteNAIGlucose 1-dehydrogenase related protein/0.509
2yy7NADL-threonine dehydrogenase/0.509
1g1aNADdTDP-glucose 4,6-dehydratase/0.508
3ijrNADOxidoreductase, short chain dehydrogenase/reductase family/0.508
4yaiNAIC alpha-dehydrogenase/0.508
3rj5NADAlcohol dehydrogenase1.1.1.10.507
4iqgNAPShort-chain dehydrogenase/reductase SDR/0.506
4i5eNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.505
4j7xNAPSepiapterin reductase1.1.1.1530.505
2hjrAPRMalate dehydrogenase, adjacent gene encodes predicted lactate dehydrogenase/0.504
2p5uNADUDP-glucose 4-epimerase/0.504
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.504
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.503
4qecNAPElxO/0.503
4wluNADMalate dehydrogenase, mitochondrial1.1.1.370.503
4wlvNADMalate dehydrogenase, mitochondrial1.1.1.370.503
2wsbNADGalactitol dehydrogenase/0.502
3wmxNADNAD dependent epimerase/dehydratase/0.502
5a1tNAIL-lactate dehydrogenase/0.501
2wdzNADGalactitol dehydrogenase/0.500
4yagNAIC alpha-dehydrogenase/0.500
1ie3NADMalate dehydrogenase/0.499
5jydNADShort chain dehydrogenase/0.499
3w8eNAD3-hydroxybutyrate dehydrogenase/0.497
1g6kNADGlucose 1-dehydrogenase1.1.1.470.496
3rj9NADAlcohol dehydrogenase1.1.1.10.496
4bmvNAPShort-chain dehydrogenase/0.496
4fj1NAP17beta-hydroxysteroid dehydrogenase/0.495
1i3lNADUDP-glucose 4-epimerase/0.493
1g0nNDPTetrahydroxynaphthalene reductase1.1.1.2520.491
1gegNADDiacetyl reductase [(S)-acetoin forming]1.1.1.3040.491
2ag5NAD3-hydroxybutyrate dehydrogenase type 2/0.491
3sx2NADUncharacterized protein/0.491
4cqlNADEstradiol 17-beta-dehydrogenase 81.1.1.620.491
4nd4NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.491
5jy1NADPutative short-chain dehydrogenase/reductase/0.491
1pzgA3DLactate dehydrogenase/0.490
3a9wNADNDP-sugar epimerase/0.490
1b15NAEAlcohol dehydrogenase1.1.1.10.489
3ajrNADNDP-sugar epimerase/0.488
3d3wNAPL-xylulose reductase1.1.1.100.488
3tscNADUncharacterized protein/0.488
4j16NADNAD/NADP transhydrogenase alpha subunit 1/0.488
4o0lNDPNADPH-dependent 3-quinuclidinone reductase/0.488
1rkxNADCDP-D-glucose-4,6-dehydratase/0.487
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.487
3lqfNADGalactitol dehydrogenase/0.487
1z7eATPBifunctional polymyxin resistance protein ArnA/0.485
2ydxNAPMethionine adenosyltransferase 2 subunit beta/0.485
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.484
3d64NADAdenosylhomocysteinase/0.484
1b16NAQAlcohol dehydrogenase1.1.1.10.483
1cydNDPCarbonyl reductase [NADPH] 21.1.1.1840.483
1xg5NAPDehydrogenase/reductase SDR family member 11/0.483
3ai2NDPNADPH-sorbose reductase/0.483
4bmsNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.483
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.482
4b8zNAPGDP-L-fucose synthase1.1.1.2710.482
5idwNAPShort-chain dehydrogenase/reductase SDR/0.482
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.481
1x7hNDPPutative ketoacyl reductase1.3.10.481
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.481
3vdqNAD3-hydroxybutyrate dehydrogenase/0.480
4hwkNAPSepiapterin reductase1.1.1.1530.480
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.479
3ai3NDPNADPH-sorbose reductase/0.479
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.479
1iy8NADLevodione reductase/0.478
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.478
1wvgAPRCDP-glucose 4,6-dehydratase4.2.1.450.478
3sjuNDPKeto reductase/0.478
4dmmNAP3-oxoacyl-[acyl-carrier-protein] reductase/0.478
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.478
1oaaNAPSepiapterin reductase1.1.1.1530.477
1u7tTDT3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.477
4b8wNAPGDP-L-fucose synthase1.1.1.2710.477
1ldeNADAlcohol dehydrogenase E chain1.1.1.10.476
3o4rNAPDehydrogenase/reductase SDR family member 41.1.1.1840.476
3w8dNAD3-hydroxybutyrate dehydrogenase/0.476
5ig2NADShort-chain dehydrogenase/reductase SDR/0.476
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.475
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.474
1vl8NAPOxidoreductase, short chain dehydrogenase/reductase family/0.474
2gdzNAD15-hydroxyprostaglandin dehydrogenase [NAD(+)]1.1.1.1410.474
3w8fNAD3-hydroxybutyrate dehydrogenase/0.474
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.474
4e5yNDPGDP-L-fucose synthase1.1.1.2710.474
4ng5NAJAlcohol dehydrogenase E chain1.1.1.10.474
1ae1NAPTropinone reductase 1/0.473
1b14NADAlcohol dehydrogenase1.1.1.10.473
1eq2NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.473
1w4zNAPPutative ketoacyl reductase1.3.10.473
2q2qNADBeta-D-hydroxybutyrate dehydrogenase/0.473
4egbNADdTDP-glucose 4,6-dehydratase/0.473
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.473
1ipeNDPTropinone reductase 21.1.1.2360.472
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.472
1pzfA3DLactate dehydrogenase/0.472
1xkqNDPUncharacterized protein/0.471
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.471
2bd0NAPSepiapterin reductase/0.470
3bmoNAPPteridine reductase/0.470
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.470
4lisNADUDP-glucose 4-epimerase (Eurofung)/0.470
1adbCNDAlcohol dehydrogenase E chain1.1.1.10.469
1mgoNADAlcohol dehydrogenase E chain1.1.1.10.469
2hrbNAPCarbonyl reductase [NADPH] 31.1.1.1840.469
3p19NDPPutative blue fluorescent protein/0.469
1f8fNADBenzyl alcohol dehydrogenase/0.468
1snyNAPLD36273p/0.468
2x86NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.468
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.468
4ajo88NL-lactate dehydrogenase A chain1.1.1.270.468
1wntNAPL-xylulose reductase1.1.1.100.467
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.467
4cpdNADAlcohol dehydrogenase/0.467
4esoNAPPutative oxidoreductase/0.467
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.466
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.466
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.466
1axeNADAlcohol dehydrogenase E chain1.1.1.10.465
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.465
1qyvNAPEstradiol 17-beta-dehydrogenase 11.1.1.620.465
1mg5NAIAlcohol dehydrogenase1.1.1.10.464
1rwbNADGlucose 1-dehydrogenase1.1.1.470.464
4ej0NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.464
2fn7NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.463
3sxpNADADP-L-glycero-D-mannoheptose-6-epimerase/0.463
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.350.463
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.462
2c20NADUDP-glucose 4-epimerase/0.462
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.462
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.462
1sbyNADAlcohol dehydrogenase1.1.1.10.461
3ggpNADPrephenate dehydrogenase/0.461
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.461
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.461
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.461
4wloNAIMalate dehydrogenase, mitochondrial1.1.1.370.461
2g5cNADPrephenate dehydrogenase/0.460
3f1kNAPUncharacterized oxidoreductase YciK10.460
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.460
1n5dNDPCarbonyl reductase [NADPH] 1/0.459
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.459
2jhfNADAlcohol dehydrogenase E chain1.1.1.10.459
3zdfNADGlyceraldehyde-3-phosphate dehydrogenase/0.459
4rf2NAPNADPH dependent R-specific alcohol dehydrogenase/0.459
1pr9NAPL-xylulose reductase1.1.1.100.458
2vhxNADAlanine dehydrogenase1.4.1.10.458
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.458
3fpzAHZThiamine thiazole synthase/0.458
1naiNADUDP-glucose 4-epimerase5.1.3.20.457
2g82NADGlyceraldehyde-3-phosphate dehydrogenase/0.457
2q2vNADBeta-D-hydroxybutyrate dehydrogenase/0.457
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.457
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.456
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.456
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.456
3gy0NAPNAD(P)-dependent oxidoreductase/0.456
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.456
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.455
1cerNADGlyceraldehyde-3-phosphate dehydrogenase/0.454
1kvrNADUDP-glucose 4-epimerase5.1.3.20.454
1ma0NADAlcohol dehydrogenase class-31.1.1.10.454
1xseNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.454
2zatNAPDehydrogenase/reductase SDR family member 41.1.1.1840.454
4qedNAPElxO/0.454
1u2dNADNAD(P) transhydrogenase subunit alpha part 11.6.1.20.453
2ijgFADCryptochrome DASH, chloroplastic/mitochondrial/0.453
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.453
5cdsNAJAlcohol dehydrogenase E chain1.1.1.10.453
1axgNADAlcohol dehydrogenase E chain1.1.1.10.452
2dvmNAD439aa long hypothetical malate oxidoreductase (NAD) [malic enzyme]/0.452
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.452
3aw9NADNAD-dependent epimerase/dehydratase/0.452
4gavFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.452
5mdhNADMalate dehydrogenase, cytoplasmic1.1.1.370.452
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.451
3k4cFADPyranose 2-oxidase/0.451
3lsmSFDPyranose 2-oxidase/0.451
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.451
4j1tNADNAD/NADP transhydrogenase alpha subunit 1/0.451
1gcoNADGlucose 1-dehydrogenase1.1.1.470.450
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.450
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.450
1adcPADAlcohol dehydrogenase E chain1.1.1.10.449
1xe55FEPlasmepsin-23.4.23.390.449
2y05NAPProstaglandin reductase 1/0.449
3l77NJPShort-chain alcohol dehydrogenase/0.449
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.449
3triNAPPyrroline-5-carboxylate reductase/0.449
4dc1NDPPutative ketoacyl reductase1.3.10.449
4m55NADUDP-glucuronic acid decarboxylase 14.1.1.350.449
3zuyTCHTransporter/0.448
4nfhNAJAlcohol dehydrogenase E chain1.1.1.10.448
1agnNADAlcohol dehydrogenase class 4 mu/sigma chain1.1.1.10.447
1geeNADGlucose 1-dehydrogenase1.1.1.470.447
2rcyNAPPyrroline-5-carboxylate reductase/0.447
2uuvFADAlkyldihydroxyacetonephosphate synthase2.5.1.260.447
3lshFADPyranose 2-oxidase/0.447
3qrwNDPPutative ketoacyl reductase1.3.10.447
4g3jVNTLanosterol 14-alpha-demethylase/0.447
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.446
3r9uFADThioredoxin reductase/0.446
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.446
1r37NADNAD-dependent alcohol dehydrogenase1.1.1.10.445
2x6tNAPADP-L-glycero-D-manno-heptose-6-epimerase/0.445
2yutNAPPutative short-chain oxidoreductase/0.445
4ntdFADThioredoxin reductase/0.445
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.445
1edoNAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic1.1.1.1000.444
2f1kNAPPrephenate dehydrogenase/0.444
2oxiNADAlcohol dehydrogenase E chain1.1.1.10.444
2fzeAPRAlcohol dehydrogenase class-31.1.1.10.443
2vnaNAPProstaglandin reductase 21.3.1.480.443
4mokFADPyranose 2-oxidase/0.443
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.443
4u2tFADCholesterol oxidase1.1.3.60.443
5eyuNADBetaine-aldehyde dehydrogenase/0.443
1a71NADAlcohol dehydrogenase E chain1.1.1.10.442
1t2aNDPGDP-mannose 4,6 dehydratase4.2.1.470.442
1tehNADAlcohol dehydrogenase class-31.1.1.10.442
1x7gNAPPutative ketoacyl reductase1.3.10.442
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.442
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.442
2zb3NDPProstaglandin reductase 21.3.1.480.442
3c212BADNA integrity scanning protein DisA/0.442
3ojlNADCap5O/0.442
1vjtNADAlpha-glucosidase, putative/0.441
2c59NADGDP-mannose 3,5-epimerase5.1.3.180.441
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.441
4xq9NADHomospermidine synthase2.5.1.440.441
4z3dNDPCarbonyl reductase [NADPH] 11.1.1.1840.441
1s20NAD2,3-diketo-L-gulonate reductase1.1.1.1300.440
2ahrNAPPyrroline-5-carboxylate reductase/0.440
2d4vNADIsocitrate dehydrogenase [NADP]/0.440
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.440
3tn7NJPShort-chain alcohol dehydrogenase/0.440