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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4caxMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.97

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4caxMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.971.000
4qbjNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.615
2nmtNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.576
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.559
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.553
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.551
4c2yMYAGlycylpeptide N-tetradecanoyltransferase 1/0.551
4b13NHWGlycylpeptide N-tetradecanoyltransferase/0.550
4ucnMYAGlycylpeptide N-tetradecanoyltransferase/0.548
4a32MYAGlycylpeptide N-tetradecanoyltransferase/0.547
4a2zMYAGlycylpeptide N-tetradecanoyltransferase/0.544
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.544
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.543
2yncYNCGlycylpeptide N-tetradecanoyltransferase/0.542
4c2zMYAGlycylpeptide N-tetradecanoyltransferase 1/0.540
4bbhNHWGlycylpeptide N-tetradecanoyltransferase/0.535
1iidNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.533
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.532
4b12NHWGlycylpeptide N-tetradecanoyltransferase/0.532
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.532
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.531
4cavMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.970.524
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.522
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.516
4b11NHWGlycylpeptide N-tetradecanoyltransferase/0.515
4c68NHWGlycylpeptide N-tetradecanoyltransferase/0.513
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.511
2wsaMYAGlycylpeptide N-tetradecanoyltransferase/0.509
2wuuNHWGlycylpeptide N-tetradecanoyltransferase/0.474
4a31MYAGlycylpeptide N-tetradecanoyltransferase/0.472
2y0mACOHistone acetyltransferase KAT8/0.457
5ag5MYAGlycylpeptide N-tetradecanoyltransferase/0.451
4iarERM5-hydroxytryptamine receptor 1B/0.450
2y05NAPProstaglandin reductase 1/0.440