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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4bqpVMYEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4bqpVMYEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.91.000
4bqrIBHEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.544
1bvrTHTEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.496
4trj665Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.463
2b365PPEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.457
4tzk641Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.453
4tzt468Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.444
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
5dqrFAD7-hydroxymethyl chlorophyll a reductase, chloroplastic1.17.7.20.441