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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4bprFADFerredoxin--NADP reductase1.18.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4bprFADFerredoxin--NADP reductase1.18.1.21.000
1qgyFADFerredoxin--NADP reductase1.18.1.20.629
4c43FADFerredoxin--NADP reductase1.18.1.20.629
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.621
1e64FADFerredoxin--NADP reductase1.18.1.20.620
1gjrFADFerredoxin--NADP reductase1.18.1.20.616
2b5oFADFerredoxin--NADP reductase1.18.1.20.612
1qh0FADFerredoxin--NADP reductase1.18.1.20.603
1h85FADFerredoxin--NADP reductase1.18.1.20.602
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.601
1queFADFerredoxin--NADP reductase1.18.1.20.599
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.598
1go2FADFerredoxin--NADP reductase1.18.1.20.598
3vo2FADFerredoxin--NADP reductase/0.598
3zc3FADFerredoxin--NADP reductase1.18.1.20.595
3zbtFADFerredoxin--NADP reductase1.18.1.20.593
1bjkFADFerredoxin--NADP reductase1.18.1.20.592
1e63FADFerredoxin--NADP reductase1.18.1.20.592
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.586
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.582
1sm4FADFerredoxin--NADP reductase/0.572
1gawFADFerredoxin/0.568
1gaqFADFerredoxin/0.566
1ewyFADFerredoxin--NADP reductase1.18.1.20.565
1qgzFADFerredoxin--NADP reductase1.18.1.20.565
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.563
1w87FADFerredoxin--NADP reductase1.18.1.20.561
1h42FADFerredoxin--NADP reductase1.18.1.20.555
1b2rFADFerredoxin--NADP reductase1.18.1.20.550
3fpkFADFerredoxin-NADP reductase/0.544
1w35FADFerredoxin--NADP reductase1.18.1.20.542
1e62FADFerredoxin--NADP reductase1.18.1.20.538
2rc6FADFerredoxin--NADP reductase/0.538
3w5uFADFerredoxin/0.537
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.536
1ogiFADFerredoxin--NADP reductase1.18.1.20.528
4y9uFADNADPH--cytochrome P450 reductase/0.525
1amoFADNADPH--cytochrome P450 reductase/0.523
1ogjFADFerredoxin--NADP reductase1.18.1.20.518
1gr1FADFerredoxin--NADP reductase1.18.1.20.508
2ok8FADFerredoxin--NADP reductase, apicoplast/0.501
2bpoFADNADPH--cytochrome P450 reductase/0.495
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.493
3qfcFADNADPH--cytochrome P450 reductase/0.492
4yaoFADNADPH--cytochrome P450 reductase/0.491
1ja1FADNADPH--cytochrome P450 reductase/0.490
2piaFMNPhthalate dioxygenase reductase/0.488
3qe2FADNADPH--cytochrome P450 reductase/0.485
4y7cFADNADPH--cytochrome P450 reductase/0.485
3qfsFADNADPH--cytochrome P450 reductase/0.484
1gvhFADFlavohemoprotein/0.483
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.474
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.474
4y9rFADNADPH--cytochrome P450 reductase/0.473
2jbsFMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component/0.471
2rc5FADFerredoxin--NADP reductase/0.469
4fk8FADFerredoxin--NADP reductase/0.469
2vnjFADNADPH:ferredoxin reductase/0.466
1j9zFADNADPH--cytochrome P450 reductase/0.465
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.465
3jqrFADFerredoxin--NADP reductase, apicoplast/0.464
3qftFADNADPH--cytochrome P450 reductase/0.461
4k1xFADNADPH:ferredoxin reductase/0.461
2bgjFADNADPH:ferredoxin reductase/0.460
4yafFADNADPH--cytochrome P450 reductase/0.460
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.459
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.457
2vn1FK5Peptidylprolyl isomerase/0.455
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.453
4r81FMNPredicted NADH dehydrogenase/0.453
2vcmM11Isopenicillin N synthase1.21.3.10.451
4b4dFADFerredoxin-NADP reductase/0.451
3ojxFADNADPH--cytochrome P450 reductase/0.450
3v2uATPProtein GAL3/0.450
2jdcCAOProbable acetyltransferase/0.448
1tllFADNitric oxide synthase, brain1.14.13.390.447
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.447
2qdxFADFerredoxin--NADP+ reductase/0.447
2vnhFADNADPH:ferredoxin reductase/0.447
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
1cqxFADFlavohemoprotein/0.446
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
2bgiFADNADPH:ferredoxin reductase/0.444
2jddACOProbable acetyltransferase/0.444
2xysSY9Soluble acetylcholine receptor/0.444
2jfhLK1UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.443
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.443
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.443
4epq0RRPoly(ADP-ribose) glycohydrolase/0.443
1x1dSAHC-20 methyltransferase/0.442
4dk70KSOxysterols receptor LXR-beta/0.442
1f20FADNitric oxide synthase, brain1.14.13.390.440
1x1bSAHC-20 methyltransferase/0.440
3nu03TUDihydrofolate reductase1.5.1.30.440