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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4bfsZVSPantothenate kinase2.7.1.33

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4bfsZVSPantothenate kinase2.7.1.331.000
2getCOKPantothenate kinase2.7.1.330.629
4bfxZVXPantothenate kinase2.7.1.330.602
2gesCOKPantothenate kinase2.7.1.330.593
4bftZVTPantothenate kinase2.7.1.330.589
2geuCOKPantothenate kinase2.7.1.330.586
4bfwZVWPantothenate kinase2.7.1.330.563
2gevCOKPantothenate kinase2.7.1.330.559
2zsdCOAPantothenate kinase2.7.1.330.544
1esmCOAPantothenate kinase2.7.1.330.528
4bfvZVVPantothenate kinase2.7.1.330.523
3af2ACPPantothenate kinase2.7.1.330.507
3af4GCPPantothenate kinase2.7.1.330.484
2zsbADPPantothenate kinase2.7.1.330.475
3aezGDPPantothenate kinase2.7.1.330.462
2zsaADPPantothenate kinase2.7.1.330.458
3af3GCPPantothenate kinase2.7.1.330.453