Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4b64FADL-ornithine N(5)-monooxygenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4b64FADL-ornithine N(5)-monooxygenase/1.000
4b63FADL-ornithine N(5)-monooxygenase/0.722
4b65FADL-ornithine N(5)-monooxygenase/0.703
5ckuFADL-ornithine N(5)-monooxygenase/0.622
4b68FADL-ornithine N(5)-monooxygenase/0.578
3s5wFADL-ornithine N(5)-monooxygenase/0.563
4b66FADL-ornithine N(5)-monooxygenase/0.560
4tlxFDAKtzI/0.543
4tm4FDAKtzI/0.541
4nzhFADL-ornithine N(5)-monooxygenase/0.540
4b67FADL-ornithine N(5)-monooxygenase/0.528
4tlzFADKtzI/0.513
4tm1FDAKtzI/0.513
4tm3FADKtzI/0.481