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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/1.000
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.506
3p84FMNPentaerythritol tetranitrate reductase/0.470
4awtFMNNADH:flavin oxidoreductase Sye1/0.468
1icqFMN12-oxophytodienoate reductase 11.3.1.420.463
2gouFMNNADH:flavin oxidoreductase Sye1/0.461
1vyrFMNPentaerythritol tetranitrate reductase/0.459
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.453
3p8iFMNPentaerythritol tetranitrate reductase/0.453
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.451
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.448
4tmbFMNOld yellow enzyme/0.446
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.445
1icsFMN12-oxophytodienoate reductase 11.3.1.420.442
3n19FNRXenobiotic reductase/0.442
1h50FMNPentaerythritol tetranitrate reductase/0.441
3p8jFMNPentaerythritol tetranitrate reductase/0.441
4rnvFMNNADPH dehydrogenase 11.6.99.10.441