sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4b0q | GMF | Beta-secretase 1 | 3.4.23.46 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4b0q | GMF | Beta-secretase 1 | 3.4.23.46 | 1.000 | |
| 4acx | S8Z | Beta-secretase 1 | 3.4.23.46 | 0.683 | |
| 4azy | 7F3 | Beta-secretase 1 | 3.4.23.46 | 0.650 | |
| 4b77 | 54M | Beta-secretase 1 | 3.4.23.46 | 0.639 | |
| 4djy | 0KR | Beta-secretase 1 | 3.4.23.46 | 0.622 | |
| 4b05 | 32D | Beta-secretase 1 | 3.4.23.46 | 0.620 | |
| 4jpe | 1M7 | Beta-secretase 1 | 3.4.23.46 | 0.616 | |
| 4acu | QN7 | Beta-secretase 1 | 3.4.23.46 | 0.612 | |
| 4b00 | I6X | Beta-secretase 1 | 3.4.23.46 | 0.606 | |
| 4frk | DWD | Beta-secretase 1 | 3.4.23.46 | 0.606 | |
| 4h3f | 10O | Beta-secretase 1 | 3.4.23.46 | 0.602 | |
| 4h3g | 10Q | Beta-secretase 1 | 3.4.23.46 | 0.601 | |
| 4b72 | 2FB | Beta-secretase 1 | 3.4.23.46 | 0.598 | |
| 4h3j | 10W | Beta-secretase 1 | 3.4.23.46 | 0.595 | |
| 4h1e | 10J | Beta-secretase 1 | 3.4.23.46 | 0.592 | |
| 4l7j | 1W2 | Beta-secretase 1 | 3.4.23.46 | 0.591 | |
| 4lc7 | 1WP | Beta-secretase 1 | 3.4.23.46 | 0.580 | |
| 4djx | 0KQ | Beta-secretase 1 | 3.4.23.46 | 0.577 | |
| 4h3i | 10V | Beta-secretase 1 | 3.4.23.46 | 0.575 | |
| 4djw | 0KP | Beta-secretase 1 | 3.4.23.46 | 0.570 | |
| 4fri | DWA | Beta-secretase 1 | 3.4.23.46 | 0.568 | |
| 4joo | 1M4 | Beta-secretase 1 | 3.4.23.46 | 0.565 | |
| 4jpc | 1M6 | Beta-secretase 1 | 3.4.23.46 | 0.560 | |
| 4dju | 0KK | Beta-secretase 1 | 3.4.23.46 | 0.559 | |
| 4b1c | 1B1 | Beta-secretase 1 | 3.4.23.46 | 0.557 | |
| 4b78 | KGG | Beta-secretase 1 | 3.4.23.46 | 0.557 | |
| 4j1f | 1HL | Beta-secretase 1 | 3.4.23.46 | 0.544 | |
| 4frj | DWB | Beta-secretase 1 | 3.4.23.46 | 0.539 | |
| 3zks | WZV | Beta-secretase 2 | 3.4.23.45 | 0.538 | |
| 4djv | 0KM | Beta-secretase 1 | 3.4.23.46 | 0.538 | |
| 3l5d | BDV | Beta-secretase 1 | 3.4.23.46 | 0.536 | |
| 3l5e | BDW | Beta-secretase 1 | 3.4.23.46 | 0.534 | |
| 4l7g | 1W0 | Beta-secretase 1 | 3.4.23.46 | 0.532 | |
| 4j1k | 1HG | Beta-secretase 1 | 3.4.23.46 | 0.531 | |
| 4bek | XK0 | Beta-secretase 1 | 3.4.23.46 | 0.529 | |
| 3zlq | 6T9 | Beta-secretase 2 | 3.4.23.45 | 0.528 | |
| 4fs4 | H24 | Beta-secretase 1 | 3.4.23.46 | 0.525 | |
| 4ha5 | 13W | Beta-secretase 1 | 3.4.23.46 | 0.521 | |
| 4l7h | 1W1 | Beta-secretase 1 | 3.4.23.46 | 0.521 | |
| 4b70 | WM9 | Beta-secretase 1 | 3.4.23.46 | 0.517 | |
| 3zmg | 6Z0 | Beta-secretase 1 | 3.4.23.46 | 0.509 | |
| 3h0b | B35 | Beta-secretase 1 | 3.4.23.46 | 0.507 | |
| 2q15 | 3MR | Beta-secretase 1 | 3.4.23.46 | 0.506 | |
| 3ufl | 508 | Beta-secretase 1 | 3.4.23.46 | 0.504 | |
| 3zkn | WZV | Beta-secretase 2 | 3.4.23.45 | 0.498 | |
| 3vv8 | B02 | Beta-secretase 1 | 3.4.23.46 | 0.495 | |
| 4j0z | 1H5 | Beta-secretase 1 | 3.4.23.46 | 0.493 | |
| 4j0y | 1H6 | Beta-secretase 1 | 3.4.23.46 | 0.492 | |
| 4exg | 916 | Beta-secretase 1 | 3.4.23.46 | 0.489 | |
| 3zki | WZV | Beta-secretase 2 | 3.4.23.45 | 0.485 | |
| 4j0v | 1H7 | Beta-secretase 1 | 3.4.23.46 | 0.483 | |
| 3l5b | BDO | Beta-secretase 1 | 3.4.23.46 | 0.481 | |
| 4j0p | 1H8 | Beta-secretase 1 | 3.4.23.46 | 0.474 | |
| 3rth | RTH | Beta-secretase 1 | 3.4.23.46 | 0.469 | |
| 3tpr | 5HA | Beta-secretase 1 | 3.4.23.46 | 0.469 | |
| 4j1e | 1HM | Beta-secretase 1 | 3.4.23.46 | 0.469 | |
| 3udj | 092 | Beta-secretase 1 | 3.4.23.46 | 0.466 | |
| 3zov | WZV | Beta-secretase 1 | 3.4.23.46 | 0.466 | |
| 4dh6 | 0KN | Beta-secretase 1 | 3.4.23.46 | 0.464 | |
| 3nsh | 957 | Beta-secretase 1 | 3.4.23.46 | 0.463 | |
| 3rsv | 3RS | Beta-secretase 1 | 3.4.23.46 | 0.463 | |
| 4i0i | 957 | Beta-secretase 1 | 3.4.23.46 | 0.463 | |
| 4j17 | 1HQ | Beta-secretase 1 | 3.4.23.46 | 0.463 | |
| 3udk | 095 | Beta-secretase 1 | 3.4.23.46 | 0.459 | |
| 3k5c | 0BI | Beta-secretase 1 | 3.4.23.46 | 0.458 | |
| 3qbh | QBH | Beta-secretase 1 | 3.4.23.46 | 0.458 | |
| 4j1c | 1HO | Beta-secretase 1 | 3.4.23.46 | 0.456 | |
| 2va7 | C27 | Beta-secretase 1 | 3.4.23.46 | 0.453 | |
| 2wf0 | ZY0 | Beta-secretase 1 | 3.4.23.46 | 0.453 | |
| 3lpj | Z75 | Beta-secretase 1 | 3.4.23.46 | 0.453 | |
| 3rtm | RTM | Beta-secretase 1 | 3.4.23.46 | 0.453 | |
| 3s2o | EV6 | Beta-secretase 1 | 3.4.23.46 | 0.451 | |
| 3udn | 09B | Beta-secretase 1 | 3.4.23.46 | 0.451 | |
| 4fse | 0VA | Beta-secretase 1 | 3.4.23.46 | 0.450 | |
| 4lxa | 1YS | Beta-secretase 1 | 3.4.23.46 | 0.450 | |
| 4jp9 | 1M5 | Beta-secretase 1 | 3.4.23.46 | 0.447 | |
| 3g70 | A5T | Renin | 3.4.23.15 | 0.443 | |
| 4dpi | 0N1 | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 4ewo | 996 | Beta-secretase 1 | 3.4.23.46 | 0.442 | |
| 3kmy | D8Y | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 3g6z | A7T | Renin | 3.4.23.15 | 0.440 | |
| 3lpk | Z76 | Beta-secretase 1 | 3.4.23.46 | 0.440 |