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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4a5lFADThioredoxin reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4a5lFADThioredoxin reductase/1.000
4ccqFADThioredoxin reductase/0.582
4up3FADThioredoxin reductase/0.576
4cbqFADThioredoxin reductase/0.545
3itjFADThioredoxin reductase 11.8.1.90.517
4ccrFADThioredoxin reductase/0.511
1tdeFADThioredoxin reductase1.8.1.90.472
1cl0FADThioredoxin reductase1.8.1.90.444