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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/1.000
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/0.535
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.526
3f03FMNPentaerythritol tetranitrate reductase/0.515
4awtFMNNADH:flavin oxidoreductase Sye1/0.515
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.513
1h50FMNPentaerythritol tetranitrate reductase/0.512
3n19FNRXenobiotic reductase/0.509
4rnuFMNNADPH dehydrogenase 11.6.99.10.507
4e2dFMNDehydrogenase/0.506
4e2bFMNDehydrogenase/0.505
4tmbFMNOld yellow enzyme/0.503
2abbFMNPentaerythritol tetranitrate reductase/0.502
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.502
3gkaFMNN-ethylmaleimide reductase/0.501
4jicFMNGTN Reductase/0.500
4rnvFMNNADPH dehydrogenase 11.6.99.10.499
1icpFMN12-oxophytodienoate reductase 11.3.1.420.497
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.497
1h63FMNPentaerythritol tetranitrate reductase/0.493
1q45FMN12-oxophytodienoate reductase 31.3.1.420.487
1icqFMN12-oxophytodienoate reductase 11.3.1.420.484
3p84FMNPentaerythritol tetranitrate reductase/0.483
1vyrFMNPentaerythritol tetranitrate reductase/0.482
3p82FMNPentaerythritol tetranitrate reductase/0.482
3p74FMNPentaerythritol tetranitrate reductase/0.481
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.478
3atyFMNProstaglandin F2a synthase/0.475
2gouFMNNADH:flavin oxidoreductase Sye1/0.473
3atzFMNProstaglandin F2a synthase/0.471
3p8iFMNPentaerythritol tetranitrate reductase/0.470
4utlFNRXenobiotic reductase/0.470
1bwkFMNNADPH dehydrogenase 11.6.99.10.466
1icsFMN12-oxophytodienoate reductase 11.3.1.420.466
3p8jFMNPentaerythritol tetranitrate reductase/0.464
3l5lFMNXenobiotic reductase/0.462
1oycFMNNADPH dehydrogenase 11.6.99.10.459
4h6kFMNNADPH dehydrogenase 11.6.99.10.459
2gqaFMNNADH:flavin oxidoreductase Sye1/0.457
4m5pFMNNADPH dehydrogenase/0.456
1bwlFMNNADPH dehydrogenase 11.6.99.10.451
3tjlFMNNADPH dehydrogenase/0.450
4awsFMNNADH:flavin oxidoreductase Sye1/0.450
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.447
4df2FMNNADPH dehydrogenase/0.447
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.446
3p62FMNPentaerythritol tetranitrate reductase/0.446
1h51FMNPentaerythritol tetranitrate reductase/0.444
4rnwFMNNADPH dehydrogenase 11.6.99.10.440